BioTech FYI Center
Bioinformatics - Bacteria Databases
Bacteria
WDCM
- World Data Center for Microorganisms
List of Bacterial Names with Standing in Nomenclature
CMR
- TIGR Comprehensive Microbial Ressource
GIB
- Genome information broker for Microbial genomes
GeneQuiz
HOBACGEN
- Homologous Bacterial Genes db
Comparison of the transport capabilities of bacterial genomes
- from Ian Paulsen
BPGD
- Bacterial polysaccharide gene db
Bacterial quorum sensing
MicrobeWorld
- Educational site on microbes
E.coli Swiss-Prot list
- Links to E.coli WWW sites and to Swiss-Prot entries
EcoWeb / EcoGene
- Very comprehensive E.coli db
ECCE
- E.coli Cell Envelope Protein Data Collection
ECDC
- E.coli db collection
EcoCyc
- Encyclopedia of E.coli genes and metabolism
GenProtEC
- E.coli genome and proteome db
Colibri
- E.coli genome db from Pasteur Institute
ECGC
- E.coli Genome Center at Wisconsin University
DDBJ E.coli
- E.coli home page at DDBJ
EcoReg
- The E.coli regulation consortium
B.subtilis Swiss-Prot list
- Links to B.subtilis WWW sites and to Swiss-Prot entries
SubtiList
- Bacillus subtilis genomic db
NRSub
- Bacillus subtilis non-redundant db [Mirror in
Japan
]
Micado
- Microbial advanced db (B.subtilis + E.coli)
BSORF
- Japanese server on B.subtilis
DBTBS
- Db of B.subtilis promoters and transcription factors
A.actinomycetemcomitans
- Actinobacillus actinomycetemcomitans strain HK1651 genome project
B.anthracis at CNBP
- Bacillus anthracis strain Ames WWW site
B.halodurans
- Bacillus halodurans strain C-125 db
B.stearothermophilus
- Bacillus stearothermophilus strain 10 genome project
BGDB
- Bordetella genome db
B.bronchiseptica
- Bordetella bronchiseptica strain RB50 genome project at Sanger Institute
B.parapertussis
- Bordetella parapertussis strain 12822 genome project at Sanger Institute
B.pertussis
- Bordetella pertussis strain Tohama I genome project at Sanger Institute
BbDB
- TIGR Borrelia burgdorferi genome db
B.aphidicola Swiss-Prot list
- Links to B.aphidicola Swiss-Prot entries
iBGD
- Integrated Buchnera genome db
B.cepacia
- Burkholderia cepacia genome project
C.jejuni
- Campylobacter jejuni strain NCTC 11168 genome project
Chlamydia
- Chlamydia pneumoniae and trachomatis
C.muridarum
- Chlamydia muridarum strain MoPn genome db at TIGR
C.pneumoniae AR39
- Chlamydia pneumoniae strain AR39 genome db at TIGR
C.pneumoniae J138
- Japanese Chlamydia pneumoniae strain J138 genome db http://www.brgene.lncc.br/indexCV.html
C.michiganensis
Claviabacter michiganensis subsp. sepdonicus genome project at Sanger Institute
C.acetobutylicum
- GTC Clostridium acetobutylicum strain ATCC 824 data
C.difficile
- Clostridium difficile strain 630 genome project at Sanger Institute
C.diphtheriae
- Corynebacterium diphtheriae strain NCTC 13129 genome project at Sanger Institute
C.ruminantium
- Cowdria ruminantium genome project at Sanger Institute
C.hutchinsonii
- Cytophaga hutchinsonii genome project
DrDB
- TIGR Deinococcus radiodurans strain R1 genome db
D.hafniense
- Desulfitobacterium hafniense genome project
E.faecium
- Enterococcus faecium genome project
F.acidarmanus
- Ferroplasma acidarmanus genome project
F.tularensis
- Francisella tularensis genome WWW site
H.influenzae Swiss-Prot list
- Links to H.influenzae WWW sites and to Swiss-Prot entries
HiDB
- Haemophilus influenzae genome db at TIGR
H.pylori Swiss-Prot list
- Links to H.pylori WWW sites and to Swiss-Prot entries
HpDB
- Helicobacter pylori strain 26695 genome db at TIGR
H.pylori J99
- Helicobacter pylori strain J99 genome db at Astra
PyloriGene
- Helicobacter pylori genomic db
L.lactis
- Lactobacillus lactis subsp. lactis strain IL1403 genome db
L.plantarum
- Lactobacillus plantarum genome project
ListiList
- Listeria monocytogenes and Listeria innocua genome db
MC-1
- Magnetococcus MC-1 genome project
M.magnetotacticum
- Magnetospirillum magnetotacticum genome project
MycDB
- Mycobacterium db
M.bovis
- Mycobacterium bovis strain AF2122/97 genome project
Leproma
- Mycobacterium leprae strain TN genome db
M.leprae at Sanger
- Mycobacterium leprae genome project at Sanger Institute
TubercuList
- Mycobacterium tuberculosis strain H37Rv genome db
MtDB
- Mycobacterium tuberculosis strain Oshkosh genome db at TIGR
M.tuberculosis at Sanger
- Mycobacterium tuberculosis strain H37Rv genome project at Sanger Institute
M.tuberculosis secreted proteins
M.tuberculosis structural genomics consortium
M.genitalium Swiss-Prot list
- Links to M.genitalium Swiss-Prot entries
MgDB
- Mycoplasma genitalium genome db at TIGR
M.pneumoniae Swiss-Prot list
- Links to M.pneumoniae Swiss-Prot entries
M.pneumoniae
- Mycoplasma pneumoniae genome project
MypuList
- Mycoplasma pulmonis genome db
Mycoplasma synoviae genome db
N.meningitidis A
- Neisseria meningitidis serogroup A strain Z2491 genome project at Sanger Institute
N.meningitidis B
- Neisseria meningitidis serogroup B strain MC58 genome db at TIGR
N.gonorrhoeae
- Neisseria gonorrhoeae strain FA 1090 genome project
N.europaea
- Nitrosomonas europaea genome project
N.punctiforme
- Nostoc punctiforme genome project
P.marinus
- Prochlorococcus marinus genome project
P.aeruginosa project
- Pseudomonas aeruginosa genome project
P.aeruginosa db
- Pseudomonas aeruginosa genome db
P.fluorescens
- Pseudomonas fluorescens genome project
R.solanacearum
- Ralstonia solanacearum genome project
Rhizobium pNGR234a Swiss-Prot list
- Links to Rhizobium plasmid pNGR234a Swiss-Prot entries
Rhizobium pNGR234a analysis
RsGDB
- Rhodobacter sphaeroides genome db
R.sphaeroides
- Rhodobacter sphaeroides genome project
R.palustris
- Rhodopseudomonas palustris genome project
RicBase
- Rickettsia conorii strain Malish 7 genome project
R.prowazekii Swiss-Prot list
- Links to Rickettsia prowazekii Swiss-Prot entries
R.prowazekii
- Rickettsia prowazekii strain Madrid E genome project
S.typhi
- Salmonella typhi strain CT18 genome project at Sanger Institute
S.typhimurium Swiss-Prot list
- Links to S.typhimurium Swiss-Prot entries
S.typhimurium
- S.typhimurium genome project
RhizoBase
- Sinorhizobium loti genome project
S.meliloti
- Sinorhizobium meliloti genome project
S.aromaticivorans
- Sphingomonas aromaticivorans genome project
S.aureus
- Staphylococcus aureus strain NCTC 8325 genome project
S.mutans
- Streptococcus mutans strain UAB159 genome project
S.pyogenes M1
- Streptococcus pyogenes strain SF370 serotype M1 genome project
S.pyogenes M5
- Streptococcus pyogenes strain Manfredo serotype M5 genome project at Sanger Institute
S.suis
- Streptococcus suis genome project at Sanger Institute
S.uberis
- Streptococcus uberis genome project at Sanger Institute
S.coelicolor
- Streptomyces coelicolor strain A3(2) genome project at Sanger Institute
S.avermitilis
- Streptomyces avermitilis strain MA-4680 genome project
PCC 6803 Swiss-Prot list
- Links to Synechocystis PCC 6803 Swiss-Prot entries
CyanoBase
- Synechocystis PCC 6803 db
Synechococcus
- Marine synechococcus genome project
T.fusca
- Thermomonospora fusca genome project
TmDB
- Thermotoga maritima genome db at TIGR
TpDB
- Treponema pallidum genome db at TIGR
T.erythraeum
- Trichodesmium erythraeum genome project
T.whipplei
- Tropheryma whipplei genome project at Sanger Institute
U.urealyticum
- Ureaplasma urealyticum genome WWW site
VcDB
- Vibrio cholerae genome db at TIGR
Xanthomonas
- Xanthomonas genome projects
X.fastidiosa
- Xylella fastidiosa genome WWW site
X.fastidiosa at DOE
- DOE Xylella fastidiosa genome project
Y.enterocolitica
- Yersinia enterocolitica strain 8082 genome project at Sanger Institute
Y.pestis at Sanger
- Yersinia pestis strain CO-92 Biovar Orientalis genome project at Sanger Institute
Y.pestis at CNBP
- Yersinia pestis genome WWW site
Bioinformatics - Bacteria Databases