|
No.
|
Author(s)
|
Title
|
TOC
|
Price
|
ISBN
|
|
1
|
Andreas D. Baxevanis and B. F. Francis Ouellette (Eds)
|
Bioinformatics: A Practical Guide to the Analysis of Genes
and Proteins, Second Edition
|
?
Bioinformatics and the Internet (A.
Baxevanis).
?
The NCBI Data Model (J. Ostell, et al.).
?
The GenBank Sequence Database (I. Karsch-Mizrachi & B. Ouellette).
?
Submitting DNA Sequences to the Databases (J.
Kans & B. Ouellette).
?
Structure Databases (C. Hogue).
?
Genomic Mapping and Mapping Databases (P.
White & T. Matise).
?
Information Retrieval from Biological
Databases (A. Baxevanis).
?
Sequence Alignment and Database Searching (G.
Schuler).
?
Creation and Analysis of Protein Multiple
Sequence Alignments (G. Barton).
?
Predictive Methods Using DNA Sequences (A.
Baxevanis).
?
Predictive Methods Using Protein Sequences (S.
Banerjee-Basu & A. Baxevanis).
?
Expressed Sequence Tags (ESTs) (T. Wolfsberg
& D. Landsman).
?
Sequence Assembly and Finishing Methods (R.
Staden, et al.).
?
Phylogenetic Analysis (F. Brinkman & D.
Leipe).
?
Comparative Genome Analysis (M. Galperin &
E. Koonin).
?
Large-Scale Genome Analysis (P. Meltzer).
?
Using Perl to Facilitate Biological Analysis
(L. Stein).
?
Glossary.
?
Index.
|
Paper
488 Pages
May 2001
2nd Edition
?51.95 /
$69.95/
?€82.30
?
Willey&Sons
?
www
|
ISBN: 0-471-38391-0
|
|
2
|
David W. Mount
|
Bioinformatics: Sequence and Genome Analysis
|
?
Chapter 1: Historical Introduction and
Overview
?
Chapter 2: Collecting and Storing Sequences in
the Laboratory
?
Chapter 3: Alignment of Pairs of Sequences
?
Chapter 4: Multiple Sequence Alignment
?
Chapter 5: Prediction of RNA Secondary
Structure
?
Chapter 6: Phylogenetic Prediction
?
Chapter 7: Database Searching for Similar
Sequences
?
Chapter 8: Gene Prediction
?
Chapter 9: Protein Classification and
Structure Prediction
?
Chapter 10: Genome Analysis
|
Paperback
564 pages
1st edition (March 15, 2001)
?Dimensions (in
inches): 1.15 x 11.02 x 8.08
?
Cold
Spring Harbor
Laboratory
?
www
|
ISBN: 0879696087
|
|
3
|
Gregory R. Grant, Warren J. Ewens
|
Statistical Methods in Bioinformatics: An Introduction
|
?
An Introduction to Probability Theory: One
Random Variable
?
An Introduction to Probability Theory: Many
Random Variables Statistics: An Introduction to Statistical Inference
?
Stochastic Processes: An Introduction to
Poisson Processes and Markov Chains
?
The Analysis of DNA Sequence Patterns: One
sequence
?
The Analysis of DNA Sequences: Multiple
sequences
?
Stochastic Processes: Random Walks
?
Statistics: Classical Estimation and
Hypothesis Testing
?
BLAST
?
Stochastic Processes: Markov Chains
?
Hidden Markov Models
?
Computationally intensive methods
?
Evolutionary models
?
Phylogenetica tree estimation
|
Hardcover
476 pages
1st edition
(June 2001)
$79.95
?
Springer Verlag
Dimensions (in inches): 1.07 x 9.55 x 6.40
|
ISBN: 0387952292
|
|
4
|
H.-W. Mewes,
B. Weiss,
H. Seidel,
|
Bioinformatics and Genome Analysis
|
?
Human Genetics
?
Genotyping.
?
Bioinformatics of Membrane Proteins.
?
SNAPping up Functionally Related Genes Based
on Context Information.
?
Promoter Analysis.
?
Cluster Analysis and its Applications to Gene
Expression Data.
?
Statistical Methods for Analyzing Gene
Expression Data for Cancer Research.
?
Structural Genomics.
?
Computational Structural Proteomics.
?
Proteomics in Biological Research.
?
The Challenge to Make Proteins Speak.
?
Construction and Prediction of Protein-Protein
Interaction Maps.
?
Bioinformatics, Cellular Flows, and
Simulation.
?
Graph-based Analysis of Metabolic Networks.
?
Orphan Protein Function and its Relation to
Glycosylation.
|
$85.00
?320 pages 75 illus.,
hardcover
Availability: Not yet published; expected release date:07/16/2002
?
Springer Verlag
|
ISBN: 3-540-42893-3, published 2002
|
|
5
|
Lecture Notes in Computer Science, Vol. 2066
|
Computational Biology
|
|
Price: $45.00
165 pages paperback
ISBN: 3-540-42242-0, published 2001
|
|
|
6
|
Cynthia Gibas, Per Jambeck
|
Developing Bioinformatics Computer Skills
|
I. Introduction
1. Biology in the Computer Age
?
2. Computational?
Approaches to Biological Questions?
II. The Bioinformatics Workstation
3. Setting Up Your Workstation
?
4. Files and Directories in Unix
?
5. Working on a Unix System
?
III. Tools for Bioinformatics
6. Biological Research on the Web
?
7. Sequence Analysis, Pairwise Alignment, and Database Searching
?
8. Multiple Sequence Alignments, Trees, and Profiles
?
9. Visualizing Protein Structures and Computing Structural
Properties?
10. Predicting Protein Structure and Function from
Sequence?
11. Tools for Genomics and Proteomics
?
IV. Databases and Visualization
12. Automating Data Analysis with Perl
?
13. Building Biological Databases
?
14. Visualization and Data Mining
?
Bibliography
Index
|
April 2001?
1-56592-664-1, Order Number: 6641
446 pages,
$34.95 US $51.95 CA ?24.95 UK
?
O'Reilly
|
|
|
7
|
James Tisdall
|
Beginning Perl for Bioinformatics
|
Preface
1. Biology and Computer Science
2. Getting Started with Perl
3. The Art of Programming
4. Sequences and Strings
5. Motifs and Loops
6. Subroutines and Bugs
7. Mutations and Randomization
8. The Genetic Code
9. Restriction Maps and Regular Expressions
10. GenBank
11. Protein Data Bank
12. BLAST
13. Further Topics
A. Resources
B. Perl Summary
Index
|
October 2001?
0-596-00080-4, Order Number: 0804
384
pages, $39.95 US $59.95 CA ?28.50 UK
?
O'Reilly
|
|
|
8
|
Cathy H. Wu, Jerry W. McLarty
|
Neural Networks and Genome Informatics
|
PART I. OVERVIEW.
Chapter 1. Neural Networks for Genome Informatics.
PART II. Neural Network Foundations.
Chapter 2. Neural Network Basics.
Chapter 3. Perceptrons and Multilayer Perceptrons.
Chapter 4. Other Common Architectures.
Chapter 5. Training of Neural Networks.
PART III. Genome Informatics Applications.
Chapter 6. Design Issues - Feature Presentation.
Chapter 7. Design Issues - Data Encoding.
Chapter 8. Design Issues - Neural Networks.
Chapter 9. Applications - Nucleic Acid Sequence Analysis.
Chapter 10. Applications - Protein Structure Prediction.
Chapter 11. Applications - Protein Sequence Analysis.
PART IV. Open Problems and Future Directions.
Chapter 12. Integration of Statistical Methods into Neural
Network Applications.
Chapter 13. Future of Genome Informatics Applications.
Glossary.
Author Index.
Subject Index.
|
Hardcover - 220 pages (September 2000)
Price: Order form
USD 91
EUR 91
?
Elsevier Science;
|
ISBN: 0080428002
|
|
9
|
P.Baldi and S. Brunak
|
Bioinformatics: The Machine Learning Approach
|
1.? Introduction
2.
Machine-Learning Foundations: The Probabilistic Framework
?
3. Probabilistic
Modeling & Inference: Examples
4. Machine
Learning Algorithms
5. Neural Networks: The Theory
6. Neural
Networks: Applications
7.? Hidden Markov
Models: The Theory
8.? Hidden Markov
Models: Applications
9.? Probabilistic
Graphical Models in Bioinformatics
10.? Probabilistic
Models of Evolution: Phylogenetic
11.? Stochastic
Grammars & Linguistics
12.? Microarrays
& Gene Expression
13.? Internet
Resources & Public Databases
A. Statistics
B. Information
Theory, Entropy, & Relative
C. Probabilistic
Graphical Models
D. HMM
Technicalities, Scaling, Periodic
E. Gaussian Processes,
Kernel Methods, and Support Vector Machines
F. Symbols and
Abbreviations?
References? Index
|
August 2001
ISBN 0-262-02506-X
400 pp.
$49.95/?34.95 (CLOTH)
?
MIT Press
|
|
|
10
|
J. Leszczynski
|
Computational Molecular Biology
|
Chapter 1. Hybrid potentials for large molecular systems
(P. Amara, M.J. Field).
2. Proton
transfer in models biomolecules
(S. Scheiner).
3. Computational approaches to the studies of the
interactions of nucleic acid bases
(J Sponer, P. Hobza, J. Leszczynski).
4. Nucleic acid bases in solution
(M. Orozco, E. Cubero, X. Barril, C. Colominas, F.J.
Luque).
5. Current trends in modeling interactions of DNA
fragments with polar solvents
(L. Gorb, J. Leszczynski).
6. Radiation-induced DNA damage and repair: An approach
from ab initio MO method
(M. Aida, M.
Kaneko, M. Dupuis).
7.? Application of
molecular orbital theory to elucidation of radical processes induced by
radiation damage to DNA
(A.-O. Colson, M.D. Sevilla).
8. Exploring the structural repertoire of Guanine-rich DNA
sequences: Computer modeling studies
(M. Bansal, M. Ravikiran, S. Chowdhury).
9. The calculation of relative binding thermodynamics of
molecular associations in aqueous environments
(G.J. Tawa, I.A. Topol, S.K. Burt).
10. Theoretical tools for analysis and modeling
electrostatic effects in biomolecules
(W.A. Sokalski,
P. Kedierski, J. Grembecka, P. Dziedonski, K. Strasburger).
11. Application of reduced models to protein structure
prediction
(J. Skolnick,
A. Kolinski, A.R. Ortiz).
12. Modeling DNA-protein interactions
(K. Zakrzewska, R. Lavery).
13. Interactions of small molecules and peptides with
membranes
(A. Pohorille, M.A. Wilson, C. Chipot, M.H. New, K.
Schwieghofer).
14. Modeling of antifreeze proteins
(J.D. Madura,
A. Wierzbicki).
15. The role of computational techniques in retrometabolic
drug design strategies
(N. Bodor, P.
Buchwald, M.-J. Huang).
16. Computational aspects of neural membrane biophysics
(R. Wallace).
|
Year 1999
Hardbound
662 pages
Price: Order form
USD 305.50
EUR 305.50
?
Elsevier Science
|
ISBN: 0-444-50030-8
|
|
11
|
S.L. Salzberg, D.B. Searls, S. Kasif,
|
Computational Methods in Molecular Biology
|
1. Grand challenges in computational biology (D.B.
Searls).
2. A tutorial introduction to computation for biologists
(S.L. Salzberg).
3. An introduction to biological sequence analysis (K.H.
Fasman, S.L. Salzberg).
4. An introduction to hidden Markov models for biological
sequences (A. Krogh).
5. Case-based reasoning driven gene annotation (G.C.
Overton, J. Haas).
6.?
Classification-based molecular sequence analysis (D.J.States,
W.C. Reisdorf, Jr.) 7. Computational gene prediction using neural networks
and similarity search (Y. Xu, E.C. Uberbacher).
8. Modeling dependencies in pre-mRNA splicing signals
(C.B. Burge).
9.? Evolutionary
approaches to computational biology (R.J. Parsons).
10. Decision trees and Markov chains for gene finding
(S.L. Salzberg).
11. Statistical analysis of protein structures: using
environmental features for multiple purposes (L. Wei, J.T. Chang, R.B.
Altman).
12. Analysis and algorithms for protein sequence-structure
alignment (R.H. Lathrop et al.).
13. THREADER: protein sequence threading by double dynamic
programming (D. Jones).
14. From computer vision to protein structure and
association (H.J. Wolfson, R. Nussinov).
15. Modeling biological data and structure with
probabilistic networks (S. Kasif, A.L. Delcher).
Appendix A: Software and databases for computational
biology on the Internet.
Appendix B: Suggestions for further reading in
computational biology.
|
Year 1998
Hardbound , Paperback
Hardbound
ISBN: 0-444-82875-3
398 pages
Please contact
your Regional Sales Office for a discount offer for larger orders.
Price: Order
form
USD 174.50
EUR 174.50
Paperback
ISBN:
0-444-50204-1
Price: Order
form
USD 52.50
EUR 52.50
?
Elsevier Science
|
|
|
12
|
Teresa Attwood, David Parry-Smith
|
Introduction to Bioinformatics
|
|
Paperback - 240 pages 1st edition (March 8, 1999)
?
Prentice Hall;
ISBN: 0582327881
|
|
|
13
|
Des Higgins (Editor), Willie Taylor (Editor)
|
Bioinformatics : Sequence, Structure, and Databanks : A
Practical Approach (Practical Approach
Series (Paper))
|
Threading Methods for Protein Structure Prediction
Comparison of Protein Three-Dimensional Structure
Multiple Alignments for Structural, Functional or
Phylolgenetic Analyses of Homologous Sequences
Hidden Markov Models for Data Base Similarity Searches
Protein Family-Based methods for Homology Detection and
Analysis
Predicting Secondary Structure from Protein Sequences
Methods for Discovering Conserved Patterns in Protein
Sequences and Structures
Comparison of Protein Sequences and Practical Database
Searching
Networking for the Biologist
SRS - Access to Molecular Biological Databanks and
Integrated Data Analysis
|
Price: ?32.50 (Paperback )
0-19-963790-3
Publication date: 14 September
2000
270 pages, numerous line figures
?
OUP
|
|
|
14
|
Minoru Kanehisa
|
Post-genome Informatics
|
Preface
Blueprint of life
Molecular biology databases - Historical background,
Informatics technologies,
New generation of molecular biology databases
Sequence analysis of nucleic acids and proteins -
Similarity search, Prediction of structures and functions
Network analysis of molecular interactions - Network
representation and computation, Principles of biochemical networks
References and further reading
|
Price: ?21.95 (Paperback )
0-19-850326-1
Publication date: 20
January 2000
158 pages, numerous line figures,
234mm
x 156mm
?
OUP
|
|
|
15
|
Jason T. L. Wang, Bruce A. Shapiro, and Dennis Shasha
|
Pattern Discovery in Biomolecular Data -
Tools, Techniques, and Applications
|
Part I. Finding Patterns in Sequences
1. Discovering Patterns in DNA Sequences by the
Algorithmic
Significance Method, Aleksandar Milosavljevic
2. Assembling Blocks, Jorja G. Henikoff
3. MEME, MAST, and Meta-MEME: New Tools for Motif
Discovery in Protein Sequences, Timothy L. Bailey et al.
4. Pattern Discovery and Classification in Biosequences,
Jason T. L. Wang et al.
Part II. Finding Patterns in 3D Structures
5. Motif Discovery in Protein Structure Databases, Janice
Glasgow, Evan Steeg, and Suzanne Fortier
6. Systematic Detection of Protein Structural Motifs,
Kentaro Tomii and Minoru Kanehisa
7. Representation and Matching of Small Flexible Molecules
in Large Databases of 3D Molecular Information, Isidore Rigoutsos et al.
Part III. System Components for Discovery
8.? A Framework for
Biological Pattern Discovery on Networks of Workstations, Bin Li, Dennis
Shasha, and Jason T. L. Wang
9. Discovering Concepts in Structural Data, Diane J. Cook,
Lawrence B.
Holder, and Gehad Galal
10. Overview: A System for Tracking and Managing the
Results from Sequence Comparison Programs, David P. Yee et al.
11. RNA Structure Analysis: A Multifaceted Approach, Bruce
A.
Shapiro et al.
Glossary
References
Index
|
Price: ?49.50 (Hardback )
0-19-511940-1
Publication date: 2 December 1999
OUP USA
272 pages, numerous halftones and line
figures, 234mm x 156mm
|
|
|
16
|
Hooman H.
Rashidi, Lukas K. Buehler
|
Bioinformatics Basics Applications in Biological Science
and Medicine
|
INTRODUCTION
DATABASES AND SEARCH TOOLS
PROTEOME ANALYSIS
COMPUTER REVOLUTION IN NEUROBIOLOGY
APPENDIX
|
Hardcover - 200 pages (December 15, 1999)
?
CRC Press;
?
ISBN: 0849323754
|
|
|
17
|
Michael S Waterman
|
Introduction to Computational Biology: Maps, Sequences and
Genomes
|
?
Introduction
?
Some Molecular Biology
?
Restriction Maps
?
Multiple Maps
?
Algorithms for DDP
?
Cloning and Clone Libraries
?
Physical Genome Maps: Oceans, Islands, and Anchors
?
Sequence Assembly
?
Databases and Rapid Sequence Analysis
?
Dynamic Programming Alignment of Two Sequences
?
Multiple Sequence Alignment
?
Probability and Statistics for Sequence
Alignment
?
Probability and Statistics for Sequence
Patterns
?
RNA Secondary Structure
?
Trees and Sequences
?
Sources and Perspectives
?
References
?
Problem Solutions and Hints
?
Mathematical Notation
?
Algorithm Index
?
Author Index
?
Subject Index
|
List Price: $62.95
Cat. #: C9391
ISBN:
0412993910
Publication Date: 6/1/1995
Number of Pages: 448
?
Chapman & Hall / CRC
|
|
|
18
|
Thomas Lengauer
|
Bioinformatics: From Genomes to Drugs
|
VOLUME I.
?
From Genomes to Drugs with Bioinformatics - An
Overview.
?
Sequence Analysis.
?
Structure, Properties and Computer
Identification of Eukaryotic Genes.
?
Analyzing Regulatory Regions in Genomes.
?
Homology Modeling in Biology and Medicine.
?
Protein Structure Prediction.
?
Protein-Ligand Docking in Drug Design.
?
Modelling Protein-Protein and Protein-DNA
Docking.
?
Appendix: Algorithmic Methods in
Bioinformatics.
VOLUME II.
?
Integrating and Accessing Molecular Biology
Resources.
?
Bioinformatics Support of Genome Sequencing
Projects.
?
Analysis of Sequence Variations.
?
Proteome Analysis.
?
Target Finding in Genomes and Proteomes.
?
Screening of Drug Databases.
?
Future Trends.
|
Hardcover - 648 pages 2nd edition Vol 2.s (July 25, 2001)
?
John Wiley & Sons
Dimensions (in inches): 1.71 x 8.94 x 7.64
|
ISBN: 3527299882
|
|
19
|
Luke Alphey
|
DNA Sequencing: From Experimental Methods to
Bioinformatics
|
|
Paperback - 206 pages 1st edition (January 15, 1997)
?
Springer Verlag
Dimensions (in inches): 0.52 x 9.12 x 6.07
|
ISBN: 0387915095
|
|
20
|
S. Schulze Kremer (Editor), S. Schulze-Kremer (Editor)
|
Advances in Molecular Bioinformatics
|
|
Paperback - 268 pages Vol 22 FAIA (January 1, 1994)
?
IOS Press;
US$79/EUR87/?55
|
ISBN: 905199172X
|
|
21
|
Dietmar Schomburg (Editor), Uta Lessel (Editor)
|
Bioinformatics: From Nucleic Acids and Proteins to Cell
Metabolism
|
?
BIOLOGICAL DATA BASES.
?
An Integrated Service Approach to Biological
Sequence Databases (K. Heumann, et al.).
?
DNA AND RNA.
?
Statistical Analysis of DNA Sequences (H.
Herzel, et al.).
?
A Consensus Match Scoring System that is
Correlated with Biological Functionality (K. Quandt, et al.).
?
PROTEIN SEQUENCES AND STRUCTURES.
?
Statistical Significance of Local Alignments
with Gaps (M. Vingron & M. Waterman).
?
An Algorithm for the Protein Docking Problem
(H.-P. Lenhof).
?
FROM MOLECULES TO CELL METABOLISM.
?
Force Field Minimization: Domain
Decomposition, Positive Definite Functions, and Wavelets (E. Schmitt).
?
Simulation and Animation of Intracellular
Diffusion (H.-G. Lipinski).
|
Paperback - 196 pages (November 1995)
?
John Wiley & Sons;
?60.00 / €99.00
|
ISBN: 3527300724
|
|
22
|
James M. Bower and Hamid Bolouri
|
Computational Modeling of Genetic and Biochemical Networks
|
This book provides specific examples, across a wide range
of molecular and cellular systems, of how modeling techniques can be used to
explore functionally relevant molecular and cellular relationships. The
modeling techniques covered are applicable to cell, developmental,
structural, and mathematical biology; genetics; and computational
neuroscience. The book, intended as a primer for both theoretical and
experimental biologists, is organized in two parts: models of gene activity
and models of interactions among gene products. Modeling examples are
provided at several scales for each subject. Each chapter includes an
overview of the biological system in question and extensive references to
important work in the area.
|
January 2001
?390 pp., 126 illus.
$59.95/?41.95 (CLOTH)
?
MIT Press
|
ISBN 0-262-02481-0
|
|
23
|
Tao Jiang, Ying Xu and Michael Q. Zhang
|
Current Topics in Computational Molecular Biology
|
This survey of computational molecular biology covers
traditional topics such as protein structure modeling and sequence alignment,
and more recent ones such as expression data analysis and comparative genomics.
It combines algorithmic, statistical, database, and AI-based methods for
studying biological problems. The book also contains an introductory chapter,
as well as one on general statistical modeling and computational techniques
in molecular biology. Each chapter presents a self-contained review of a
specific subject.
|
March 2002
?7 x 9, 540 pp., 100
illus.
$55.00/?37.95 (CLOTH)
?
MIT Press
|
ISBN 0-262-10092-4
|
|
24
|
Pavel A. Pevzner
|
Computational Molecular Biology: An Algorithmic Approach
|
omputer science and mathematics are transforming molecular
biology from an informational to a computational science. Drawing on
computational, statistical, experimental, and technological methods, the new
discipline of computational molecular biology is dramatically increasing the
discovery of new technologies and tools for molecular biology.
|
August 2000
332 pp., 100 illus.
$50.00/?34.95
(CLOTH)
?
MIT Press
|
ISBN 0-262-16197-4
|
|
25
|
Julio Collado-Vides and Ralf Hofest?dt
|
Gene Regulation and Metabolism: Post-Genomic Computational
Approaches
|
This book focuses on current computational approaches to
understanding the complex networks of metabolic and gene regulatory
capabilities of the cell. The contributors look well beyond the state of the
art in computational biology to anticipate what biological research will be
like in a post-genomic world.
|
July 2002
7 x 9, 295 pp., 68 illus.
$45.00/?30.95 (CLOTH)
?
MIT Press
|
ISBN 0-262-03297-X
|
|
26
|
Stephen Misener (Editor), Stephen A. Krawetz (Editor)
|
Bioinformatics: Methods and Protocols
|
|
Hardcover - 500 pages 1st edition (January 15, 2000)
?
Humana Press
Dimensions (in inches): 1.38 x 9.27 x 6.21
|
ISBN: 0896037320
|
|
27
|
Peter Clote, Rolf Backofen
|
Computational Molecular Biology: An Introduction
|
?
Preface
?
Molecular Biology
?
Math Primer
?
Sequence Alignment
?
All About Eve
?
Hidden Markov Models
?
Structure Prediction
?
Appendix A Mathematical Background
?
Appendix B Resources
?
References
?
Index
|
Paper
300 Pages
September
2000
$55.00
?
John Wiley & Sons
|
ISBN: 0-471-87252-0
|
|
28
|
Dan Gusfield
|
Algorithms on Strings, Trees
and Sequences
|
Part I. Exact String Matching: The Fundamental
String Problem: 1. Exact matching: fundamental preprocessing and first
algorithms;
2. Exact matching: classical comparison-based methods;
3. Exact matching: a deeper look at classical methods;
4. Semi-numerical string matching;
Part II. Suffix Trees And Their Uses:
5. Introduction to suffix trees;
6. Linear time construction of suffix trees;
7. First applications of suffix trees;
8. Constant time lowest common ancestor retrieval;
9. More applications of suffix trees;
Part III. Inexact Matching, Sequence Alignment, And
Dynamic Programming:
10. The importance of (sub)sequence comparison in
molecular biology;
11. Core string edits, alignments, and dynamic
programming;
12. Refining core string edits and alignments;
13. Extending the core problems;
14. Multiple string comparison: the Holy Grail;
15. Sequence database and their uses: the motherlode;
Part IV. Currents, Cousins And Cameos:
16. Maps, mapping, sequencing and superstrings;
17. Strings and evolutionary trees;
18. Three short topics;
19. Models of genome-level mutations
|
P rice: GBP 47.50
Binding: Hardback
Size: 262 x 185 mm
Pages: 554
Weight: 1.185kg
Figures: 145 line diagrams
?
Cambridge
|
ISBN: 0521585198
|
|
29
|
Stanley
Letovsky (Editor)
|
Bioinformatics: Databases and Systems
|
Introduction; S. Letovsky. Databases.
1. NCBI: Integrated Data for Molecular Biology Research;
K.
Sirotkin.
2. Hovergen: Comparative Analysis of Homologous Vertebrate
Genes; L. Duret, et al.
3. WIT/WIT2: Metabolic Reconstruction Systems; R.
Overbeek, et al.
4. EcoCyc: The Resource and the
Lessons Learned; P.D. Karp, M. Riley.
5. KEGG: From Genes to Biochemical Pathways; M. Kanehisa.
6.OMIM: Online Mendelian Inheritance in Man; A.F. Scott, et
al. 7. GDB: Integrating Genomic Maps; S.
Letovsky.
8. HGMD: The Human Gene Mutation Database; M. Krawczak, et
al.
9. Senselab: Modeling Heterogenous Data on the Nervous
System; P. Nadkarni, et al.
10. The Mouse Genome Database and The Gene Expression Database:
Genotype to Phenotype; J.T. Eppig, et al.
11. The Edinburgh
Mouse Atlas: Basic Structure and Informatics; R.A. Baldock, et al.
12. FlyBase: Genomic and Post-Genomic Viewpoints; The
FlyBase Consortium.
13. MaizeDB: The Maize Genome Database; M. Polacco, E. Coe.
14. AGIS: Using the Agricultural Genome Information
System; S.M. Beckstrom-Sternberg, D.C. Jamison.
15. CGSC: The E. coli Genetic Stock Center
Database; M.K.B. Berlyn. Systems.
16. OPM: Object-Protocol Model Data Management Tools '97;
V.M. Markowitz, et al.
17. BioKleisli: Integrating Biomedical Data and Analysis
Packages; S.B. Davidson, et al.
18. SRS: Analyzing and Using Data from Heterogenous
Textual Databanks; P. Carter, et al.
19. Biology Workbench: A Computing and Analysis
Environment for the Biological Sciences; R. Unwin, et al.
20. EBI: CORBA and the EBI Databases; K.
Jungfer, et al.
21. Biowidgets: Reusable Visualization Components for
Bioinformatics; J. Crabtree, et al.
22. ACEDB: The ACE Database Manager; J. Thierry-Mieg, et
al. 23. LABBASE: Data and Workflow Management for Large Scale Biological
Research; N. Goodman, et al.
Index.
|
Hardcover - 304 pages 1st
edition (September 15, 1999)
?
Kluwer Academic Publisher
EUR 154.50 /? USD
146.50 /? GBP 112.50
|
ISBN: 079238573X
|
|
30
|
Timo Koski
|
Hidden Markov Models for Bioinformatics
|
Foreword.
1.Prerequisites in probability calculus.
2. Information and the Kullback Distance.
3. Probabilistic Models and Learning.
4. EM Algorithm.
5. Alignment and Scoring.
6. Mixture Models and Profiles.
7. Markov Chains.
8. Learning of Markov Chains.
9. Markovian Models for DNA sequences.
10.Hidden Markov Models: an Overview.
11. HMM for DNA Sequences.
12. Left to Right HMM for Sequences.
13. Derin's Algorithm.
14. Forward - Backward Algorithm.
15. Baum - Welch Learning Algorithm.
16. Limit Points of Baum - Welch.
17. Asymptotics of Learning.
18. Full Probabilistic HMM.
Index.
|
?
Kluwer Academic Publishers, Dordrecht
Hardbound, ISBN
1-4020-0135-5
November 2001 , 416 pp.
EUR 150.00 /? USD 138.00 /
?GBP 94.00
Paperback, ISBN 1-4020-0136-3
November 2001 , 416 pp.
EUR 34.00
/? USD 31.00 /
? GBP 21.00
|
|
|
31
|
Stuart M. Brown
|
Bioinformatics : A Biologist's Guide to Biocomputing and
the Internet
|
|
Hardcover - 188 pages (January 15, 2000)
?
Eaton Pub Co;
|
ISBN: 188129918X
|
|
32
|
David Sankoff
Joseph H. Nadeau
|
Comparative Genomics:
Empirical and Analytical Approaches to Gene Order Dynamics, Map
Alignment and the Evolution of Gene Families
|
Preface.
Foreword; W.F. Doolittle.
Introduction. Comparative Genomics; D. Sankoff, J.H.
Nadeau.
1.Mechanisms. Cytogenetics, Molecular Genetics, Population
Genetics.
2. Organelles: Mitochondria and Chloroplast.
Rearrangements in Small Genomes.
3. Combinatorial Algorithms. A New Set of Problems for a
New Kind of Data. 4. Prokaryotes. Genome Scrambling versus Functional
Clustering.
5. Statistics. The Quantification of Comparative Mapping.
6. Nuclear Genomes. Evolutionary Inference from
Comparative Mapping.
7. Gene and Genome Duplication and Multi-gene Families.
How Can Duplication by Analyzed
|
?
Kluwer Academic Publishers, Dordrecht
Hardbound, ISBN 0-7923-6583-6
September 2000 , 568 pp.
EUR 206.50 /
? USD 240.00 /
? GBP 150.00
Paperback, ISBN 0-7923-6584-4
September 2000 , 568 pp.
EUR 68.00 /? USD 79.00 /
? GBP 49.00
|
|
|
33
|
H.A. Lim, J.W. Fickett, C.R. Cantor (Editor)
|
Bioinformatics, Supercomputing and Complex Genome
|
?
Linguistic Approaches
?
Mapping and Sequencing I
?
Genome Map
?
Mapping & Sequencing II
?
Databases
?
Applications of Neural-Net
?
Genome Sequence Analysis
|
Hardcover (September 1993)
?
World Scientific Pub Co;
|
ISBN: 9810211570
|
|
34
|
Steffen Schulze-Kremer
|
Molecular Bioinformatics : Algorithms and Applications
|
|
Library Binding - 300 pages (October 1995)
?
Walter De Gruyter;
US$ 68.00
|
ISBN: 3110141132
|
|
35
|
Bruno Gaeta, Kirsten Balding
|
ANGIS Bioinformatics Handbooks: Four Volume Set
|
|
Paperback (1997)
?
CSIRO Publishing;
|
ISBN: 0643062785
|
|
36
|
M. J. Bishop
|
Genetics Databases
|
?
M. Bishop, Introduction.
?
G. Williams, Nucleic Acid and Protein Sequence
Databases.
?
R. Cotton, Phenotype, Mutation, and Genetic Linkage
Databases and Their Links to Sequence Databases.
?
R. Guigo,DNA Composition, Codon Usage, and
Exon Prediction. W. Taylor, Properties of
Amino Acids in Sequences.
?
M. Gribskov, Sequence Comparison.
?
J. Epplen, Simple Repetitive Sequences in DNA
Databanks.
?
P. Bucher, Gene Feature Identification.
?
D. Higgins, Multiple Sequence Alignment.
?
K. Triman, RNAs.
?
C. Ponting and D.J. Blake, Predicting the
Evolution, Structure, and Function of Proteins from Sequence Information.
?
D. Jones, Structure Databases and Structure
Alignments.
?
M. Gribskov, Bourne, Smith, Integrated Data
Resource for Protein Kinases.
?
R. Baldock, Gene Expression Databases.
?
P.D. Karp, Pathways and Development.
|
Paperback - 320 pages Casebound edition (September 1999)
?
Academic Pr
US49.95
|
ISBN: 0121016250
|
|
37
|
Richard Durbin, Sean R. Eddy, Anders Krogh,
Graeme Mitchison
|
Biological Sequence Analysis
|
1. Introduction;
2. Pairwise sequence alignment;
3. Multiple alignments;
4. Hidden Markov models;
5. Hidden Markov models applied to biological sequences;
6. The Chomsky hierarchy of formal grammars;
7. RNA and stochastic context-free grammars;
8. Phylogenetic trees;
9. Phylogeny and alignment;
Index.
|
Binding: Paperback (Hardback)
Size: 248 x 175 mm
Pages: 368
Weight: 0.627kg
?
Cambridge
GBP 22.95
|
ISBN: 0521629713
|
|
38
|
Michael J. E. Sternberg
|
Protein Structure Prediction - A Practical
Approach
|
?
Protein structure prediction - principles and
approaches
?
Protein sequence alignment and database
scanning
?
Identification of protein sequence motifs
?
Prediction of secondary structure
?
Prediction of transmembrane protein topology
?
Comparative modelling of proteins
?
Antibody combining sites: structure and
prediction
?
Protein folds and their recognition from
sequence
?
The combinatorial approach
?
Modelling protein conformation by molecular
mechanics and dynamics Docking ligands to proteins
?
The prediction challenge
|
Price: ?30.00 (Paperback)
0-19-963496-3
Publication date: 28
November 1996
?
OUP
IRL Press 318 pages
|
|
|
39
|
Joao Carlos Setubal, Joao Meidanis, Jooao Carlos Setubal
|
Introduction to Computational Molecular Biology
|
|
Hardcover - 320 pages 1st edition (January 16, 1997)
?
Brooks/Cole Pub Co;
|
ISBN: 0534952623
|
|
40
|
Arthur M. Lesk
|
Introduction to Bioinformatics
|
?
1 Introduction to bioinformatics
?
2 Genome organization and evolution
?
3 Archives and information retrieval
?
4 Alignments and phylogenetic trees
?
5 Protein structure and drug design
|
Price: ?19.99 (Paperback )
?
Publication
date: 14 February
'>? 2002
320
pages, numerous figures,
246mm x 189mm
?
OUP
|
ISBN:0-19-925196-7
|
|
41
|
Jean-Michel Claverie and Cedric Notredame
|
Bioinformatics for Dummies
|
Introduction.
Part I: Getting Started in Bioinformatics.
?
Chapter 1: Finding Out What Bioinformatics Can
Do for You.
?
Chapter 2: How Most People Use Bioinformatics.
Part II: A Survival Guide to Bioinformatics.
?
Chapter 3: Using Nucleotide Sequence
Databases.
?
Chapter 4: Using Protein and Specialized
Sequence Databases.
?
Chapter 5: Working with a Single DNA Sequence.
?
Chapter 6: Working with a Single Protein
Sequence.
Part III: Becoming a Pro in Sequence Analysis.
?
Chapter 7: Similarity Searches on Sequence
Databases.
?
Chapter 8: Comparing Two Sequences.
?
Chapter 9: Building a Multiple Sequence
Alignment.
?
Chapter 10: Editing and Publishing Alignments.
Part IV: Becoming a Specialist: Advanced Bioinformatics
Techniques.
?
Chapter 11: Working with Protein 3-D
Structures.
?
Chapter 12: Working with RNA.
?
Chapter 13: Building Phylogenetic Trees.
Part V: The Part of Tens.
?
Chapter 14: The Ten Commandments When Using
Servers.
?
Chapter 15: Some Useful Bioinformatics Resources.
Glossary
Index.
|
ISBN: 0-7645-1696-5
Paperback
480 Pages
January 2003
US $29.99
John-Wiley
|
|
|
42
|
Bryan P. Bergeron
|
Bioinformatics
Computing
|
?
Preface.
?
1. The Central Dogma.
?
2. Databases.
?
3. Networks.
?
4. Search Engines.
?
5. Visualization.
?
6. Statistics.
?
7. Data Mining.
?
8. Pattern Matching.
?
9. Modeling and Simulation.
?
10. Communications.
?
Bibliography.
?
Index.
|
Paper, 439 pp.
ISBN: 0131008250
Published: NOV 19, 2002
Prentice Hall
|
|
|
43
|
Philip
E. Bourne,
Helge Weissig
|
Structural
Bioinformatics
|
Preface (J. Wooley).
Introductory Comments (The Editors).
SECTION I: INTRODUCTION.
?
What is Bioinformatics and Structural
Bioinformatics (R. Altman & J. Dugan).
?
Fundamentals of Protein Structure (E. Scheeff
& L. Fink).
?
Fundamentals of DNA and RNA Structure (S.
Neidle, et al.).
?
Computational Aspects of High-Throughput
Crystallographic Macromolecular Structure Determination (P. Adams, et al.).
?
Macromolecular Structure Determination by NMR
Spectroscopy (J. Markley, et al.).
?
Electron Microscopy (N. Volkmann & D.
Hanein).
?
Molecular Visualization (J. Tate).
SECTION II: DATA REPRESENTATION AND DATABASES.
?
The PDB Format, mmCIF Formats and Other Data
Formats (J. Westbrook & P. Fitzgerald).
?
The Protein Data Bank (The PDB Team).
?
The Nucleic Acid Database (H. Berman, et
al.).
?
Other Structure Based Databases (H. Weissig
& P. Bourne).
SECTION III: COMPARATIVE FEATURES.
?
Protein Structure Evolution and the SCOP
Database (B. Reddy & P. Bourne).
?
The CATH Domain Structure Database (C. Orengo,
et al.).
?
Structural Quality Assurance (R. Laskowski).
?
All-Atom Contacts: A New Approach to Structure
Validation (J. Richardson).
?
Structure-Structure Comparison and Alignment (I. Shinadyalov & P. Bourne).
SECTION IV: STRUCTURE AND FUNCTIONAL ASSIGNMENT.
?
Secondary Structure Assignment (C. Andersen
& B. Rost).
?
Identifying Structural Domains in Proteins (L.
Wernisch & S. Wodak).
?
Inferring Protein Function from Structure (G. Bartlett,
et al.).
SECTION V: PROTEIN INTERACTIONS.
?
Prediction of Protein-Protein Interactions
from Evolutionary Information (A. Valencia & F. Pazos).
?
Electrostatic Interactions (N. Baker & J.
McCammon).
SECTION VI: PROTEINS AS DRUG TARGETS.
?
Principles and Methods of Docking and Ligand
Design (J. Krumrine, et al.).
?
Structural Bioinformatics in Drug Discovery
(E. Fauman, et al.).
SECTION VII: STRUCTURE PREDICTION.
?
The CASP Experiment and Its Findings (TBN).
?
Homology Modeling (E. Krieger, et al.).
?
Fold Recognition Methods (A. Godzik).
?
Ab Initio Methods (D. Chivian, et
al.).
?
Prediction in 1D: Secondary Structure,
Membrane Helices, and Accessibility (B. Rost).
SECTION VIII: THE FUTURE.
?
Structural Genomics (S. Burley & J.
Bonanno).
Epilogue.
|
ISBN: 0-471-20200-2
Hardcover
649 Pages
February 2003
US $150.00
John
Wiley
|
|
|
44
|
Michael Barnes, Ian C Gray
|
Bioinformatics for Geneticists
|
?
SECTION I: AN INTRODUCTION TO BIOINFORMATICS
FOR THE GENETICIST.
?
Introduction: The Role of Genetic Bioinformatics
(Michael R. Barnes and Ian C. Gray).
?
Internet Resources for the Geneticist (Michael
R. Barnes and Christopher Southan).
?
Human Genetic Variation
? Databases and Concepts (Michael R. Barnes).
?
Finding, Delineating and Analysing Genes
(Christopher Southan).
SECTION II: THE IMPACT OF COMPLETE GENOME SEQUENCES ON
GENETICS.
?
Assembling a View of the Human Genome (Colin
A. Semple).
?
Mouse and Rat Genome Informatics (Judith A.
Blake, Janan Eppig and Carol J. Bult).
?
Genetic and Physical Map Resources - An
Integrated View (Michael R. Barnes).
SECTION III: BIOINFORMATICS FOR GENETIC STUDY DESIGN.
?
From Linkage Peak
to Culprit Gene: Following Up Linkage Analysis of Complex Phenotypes with
Population-based Association Studies (Ian C. Gray).
?
Genetic Studies from Genomic Sequence (Michael
R. Barnes).
?
SNP Discovery and PCR-based Assay Design: From
In Silico Data to the Laboratory Experiment (Ellen Vieux, Gabor Marth and Pui
Kwok).
?
Tools for Statistical Analysis of Genetic Data
(Aruna Bansal, Peter R. Boyd and Ralph McGinnis).
SECTION IV: BIOLOGICAL SEQUENCE ANALYSIS AND
CHARACTERIZATION.
?
Predictive Functional Analysis of
Polymorphisms - An Overview (Michael R. Barnes).
?
Functional In Silico Analysis of Non-Coding
SNPs (Thomas Werner).
?
Amino Acid Properties and Consequences of
Substitutions (Matthew J. Betts and Robert B. Russell).
SECTION V: GENETICS/GENOMICS INTERFACES.
?
Gene Expression Informatics and Analysis (A.
H. C. van Kampen, J. M. Ruijter, B. D. C. van Schaik, H. N. Caron and R. Versteeg).
?
Proteomic Informatics (Jirtme Wojcik and
Alexandre Hamburger).
?
Concluding Remarks: Final Thoughts and Future
Trends (Michael R. Barnes and Ian C. Gray).
|
ISBN: 0-470-84394-2
Paperback
350 Pages
April 2003
US $65.00
John
WIley
|
|
|
45
|
A.
Malcolm Campbell,
Laurie
J. Heyer
|
Discovering
Genomics, Proteomics, and Bioinformatics
|
GENOMIC SEQUENCES
?
Genome Sequence Acquisition and Analysis
?
Genome Sequences to Answer Interesting
Questions
?
Genomic Variations
GENOMIC EXPRESSION
?
Basic Research with DNA Microarrays
?
Applied Research with Microarrays
?
Proteomics
WHOLE GENOME PERSPECTIVE
?
Genomic Circuitry in Single Genes
?
Integrated Genomic Circuits
?
Modeling Whole-Genome Circuits
TRANSITION FROM GENETICS TO GENOMICS: MEDICAL CASE
STUDIES
?
Whats Wrong with My Child?
?
Why Can't I Just Take a Pill to Lose Weight?
?
Why Can't We Cure More Diseases?
?
Appendix A: Introduction to Genomics on the
Web
|
2003
352 pp. + appendix
Paperback w/CD?ROM USD $70.60
ISBN 0-8053-4722-4
CSHL Press
|
|
|
46
|
Isaac S. Kohane,?
Alvin Kho,
Atul J. Butte
|
Microarrays for an Integrative Genomics
|
?
Introduction
?
Experimental Design
?
Microarray measurements to analyses
?
Genomic Data Mining Techniques
?
Bio-Ontologies, Data Models, Nomenclature
?
From Functional Genomics to Clinical Relevance
?
The Near Future
|
August 2002
ISBN 0-262-11271-X
8 x 9, 326 pp., 82 illus.
$40.00/?26.95 (CLOTH)
MIT Press
|
|
|
47
|
Rex A. Dwyer
|
Genomic
Perl: From Bioinformatics Basics to Working Code
|
?
The central dogma;
?
RNA secondary structure;
?
Comparing DNA sequences;
?
Statistical models;
?
Substitution matrices for amino acids;
?
Sequence databases;
?
Local alignment and the BLAST heuristic;
?
Statistics of BLAST database searches;
?
Multiple sequence alignment I;
?
Multiple sequence alignment II;
?
Phylogeny reconstruction;
?
Protein motifs and PROSITE;
?
Fragment assembly;
?
Coding sequence prediction with dicodon
frequencies;
?
Satellite identification;
?
Restriction mapping;
?
Hybridization mapping;
?
Genome rearrangement: gates and hurdles;
?
Now what?; A. Drawing RNA cloverleaves; B.
Space-saving strategies for alignment; C. A data structure for disjoint sets;
D. A data structure for set operations.
|
?45.00
February 2003
Hardback
352 pages 100 exercises?
ISBN: 052180177X
Cambridge
University Press
|
|
|
48
|
Gary B. Fogel,
David W. Corne
|
Evolutionary Computation in Bioinformatics
|
PART
I - Introduction to the Concepts of Bioinformatics and Evolutionary
Computation
Chapter 1. An Introduction to Bioinformatics for Computer Scientists
By David W. Corne and Gary B. Fogel
Chapter 2. An Introduction to Evolutionary Computation for Biologists
By Gary B. Fogel and David W. Corne
PART II - Sequence and Structure Alignment
Chapter 3. Determining Genome Sequences from Experimental Data Using
Evolutionary Computation
By Jacek Blazewic and Marta Kasprzak
Chapter 4. Protein Structure Alignment Using Evolutionary Computation
By Joseph D. Szustakowski and Zhipeng Weng
Chapter 5. Using Genetic Algorithms for Pairwise and Multiple Sequence
Alignments
By C?dric Notredame
PART III - Protein Folding
Chapter 6. On the Evolutionary Search for Solutions to the Protein Folding
Problem
By Garrison W. Greenwood and Jae-Min Shin
Chapter 7. Toward Effective Polypeptide Structure Prediction with Parallel
Fast Messy Genetic Algorithms
By Gary B. Lamont and Laurence D. Merkle
Chapter 8. Application of Evolutionary Computation to Protein Folding with
Specialized Operators
By Steffen Schulze-Kremer
PART IV - Machine Learning and Inference
Chapter 9. Identification of Coding Regions in DNA Sequences Using Evolved
Neural Networks
By Gary B. Fogel, Kumar Chellapilla, and David B. Fogel
Chapter 10. Clustering Microarray Data with Evolutionary Algorithms
By Emanuel Falkenauer and Arnaud Marchand
Chapter 11. Evolutionary Computation and Fractal Visualization of Sequence
Data
By Dan Ashlock and Jim Golden
Chapter 12. Identifying Metabolic Pathways and Gene Regulation Networks with
Evolutionary Algorithms
By Junji Kitagawa and Hitoshi Iba
Chapter 13. Evolutionary Computational Support for the Characterization of
Biological Systems
By Bogdan Filipic and Janez Strancar
PART V - Feature Selection
Chapter 14. Discovery of Genetic and Environmental Interactions in Disease
Data Using Evolutionary Computation
By Laetitia Jourdan, Clarisse Dhaenens[AQ2], and El-Ghazali Talbi
Chapter 15. Feature Selection Methods Based on Genetic Algorithms for in
Silico Drug Design
By Mark J. Embrechts, Muhsin Ozdemir, Larry Lockwood, Curt Breneman, Kristin
Bennet, Dirk Devogelaere, and Marcel Rijkaert
Chapter 16. Interpreting Analytical Spectra with Evolutionary Computation
By Jem J. Rowland
Appendix: Internet Resources for Bioinformatics Data and Tools
|
ISBN 1558607978 ? Hardback ? 450 Pages
Morgan Kaufmann ? Published September 2002
Price: ? 43.95
|
|
|
49
|
Dan E. Krane,
Michael L.
Raymer
|
Fundamental
Concepts of Bioinformatics
|
I. MOLECULAR BIOLOGY AND BIOLOGICAL CHEMISTRY
II. DATA SEARCHES AND PAIRWISE ALIGNMENTS
III. SUBSTITUTION PATTERNS.
IV. DISTANCE-BASED METHODS OF PHYLOGENETICS
V. CHARACTER-BASED APPROACHES TO PHYLOGENETICS
VI. GENOMICS AND GENE RECOGNITION
VII. PROTEIN FOLDING
VIII. PROTEOMICS
Appendix 1: A gentle introduction to programming and data
structures
Appendix 2: Enzyme kinetics
Appendix 3: Sample programs in PERL and worksets
|
ISBN: 0-8053-4633-3
Publisher: Benjamin Cummings
Copyright: 2003
Format: Paper; 320 pp
Published: 09/12/2002
Status: Instock
US: $70.60
|
|
|
50
|
lang=EN '>Westhead, D.R., Parish, J.H., Twyman
R.M.
|
Instant
Notes Bioinformatics
|
?
SECTION A - OVERVIEW OF BIOINFORMATICS
?
SECTION B - DATA ACQUISITION
?
SECTION C - DATABASES ? CONTENTS STRUCTURE AND
ANNOTATION
?
SECTION D - RETRIEVAL OF BIOLOGICAL DATA
?
SECTION E - SEARCHING SEQUENCE DATABASES BY
SEQUENCE SIMILARITY CRITERIA
?
SECTION F - MULTIPLE SEQUENCE ALIGNMENT: GENE
AND PROTEIN FAMILIES
?
SECTION G - PHYLOGENETICS
?
SECTION H - SEQUENCE ANNOTATION
?
SECTION I - STRUCTURAL BIOINFORMATICS
?
SECTION J - MICROARRAY DATA ANALYSIS
?
SECTION K - PROTEOMIC DATA ANALYSIS
?
SECTION M - CHEMINFORMATICS IN BIOLOGY
?
SECTION N - BIOINFORMATICS IN THE
PHARMACEUTICAL INDUSTRY
?
SECTION O - BASIC PRINCIPLES OF COMPUTING IN
BIOINFORMATICS
|
ISBN: 1859962726
Published: Sep 2002
Series: Instant Notes
Paperback; 272 pages
150 b/w line drawings
?17.99
BIOS
Scientific Publishers
|
|
|
51
|
Scott Markel,
Darryl Le?n
|
Sequence Analysis in a Nutshell
A Guide to Common Tools and Databases
|
I.
Data Formats
?
1. FASTA Format
?
2. GenBank/EMBL/DDBJ
?
3. SWISS-PROT
?
4. Pfam
?
5. PROSITE
II.
Tools
?
6. Readseq
?
7. BLAST
?
8. BLAT
?
9. ClustalW
?
10. HMMER
?
11. MEME/MAST
?
12. EMBOSS
III.
Appendixes
?
A. Nucleotide and Amino Acid Tables
?
B. Genetic Codes
?
C. Resources
?
D. Future Plans
?
Index
|
January 2003?
0-596-00494-X,
Order Number: 494X
302 pages,
$29.95 US,
$46.95 CA,
?20.95 UK
|
>
|
|
52
|
Pierre
Baldi, G. Wesley Hatfield
|
DNA
Microarrays and Gene Expression
From Experiments to Data Analysis and
Modeling
|
?
Preface;
?
1. A brief history of genomics;
?
2. DNA array formats;
?
3. DNA array readout methods;
?
4. Gene expression profiling experiments:
problems, pitfalls and solutions;
?
5. Statistical analysis of array data:
inferring changes;
?
6. Statistical analysis of array data:
dimensionality reduction, clustering, and regulatory regions;
?
7. Survey of current DNA array applications;
?
8. Systems biology: overview of regulatory,
metabolic and signaling networks.
|
?35.00
September 2002
Hardback
230 pages 16 line diagrams 1 half-tone 16 figures
ISBN: 0521800226
Cambridge
University Press
|
|
|
53
|
Julio
Collado-Vides and Ralf Hofest?dt
|
Gene Regulation and Metabolism
Post-Genomic Computational
Approaches
|
?
|
July 2002
ISBN 0-262-03297-X
7 x 9, 320 pp., 68 illus.
$45.00/?29.95 (CLOTH)
MIT
Press
|
|
|
54
|
Hiroaki
Kitano
|
Foundations of
Systems Biology
|
?
|
October 2001
ISBN 0-262-11266-3
7 x 9, 320 pp., 100 illus.
$47.95/?31.95 (CLOTH)
MIT Press
|
|
|
55
|
Tamar Schlick
|
Molecular Modeling and Simulation
An
Interdisciplinary Guide
|
?
Biomolecular Structure and Modeling: Historical Perspective
?
Biomolecular Structure and Modeling: Problem and Application
Perspective
?
Protein Structure Introduction
?
Protein Structure Hierarchy
?
Nucleic Acids Structure Minitutorial
?
Topics in Nucleic Acids Structure
?
Theoretical and Computational Approaches to Biomolecular
Structure
?
Force Fields
?
Nonbonded Computations
?
Multivariate Minimization in Computational Chemistry
?
Monte Carlo Techniques
?
Molecular Dynamics: Basics
?
Molecular Dynamics: Further Topics
?
Similarity and Diversity in Chemical Design
?
Epilogue
?
Appendices
?
Index
|
Price: $79.95
656 pages , 6 1/8 x 9 , 147 illus., hardcover
ISBN: 0-387-95404-X, published 2002
Textbook
Springer-Verlag
|
|
|
56
|
C.A.
Orengo, D.T. Jones and J.M. Thornton
|
Bioinformatics
Genes, proteins and computers
|
CH
1. MOLECULAR EVOLUTION (S. Nagl)
CH 2. GENE FINDING (J. G. Sgorous and R. M. Twyman)
CH 3. SEQUENCE COMPARISON METHODS (C. Orengo)
CH 4. AMINO ACID RESIDUE CONSERVATION (W. S. J. Valdar and D. T. Jones)
CH 5. FUNCTION PREDICTION FROM PROTEIN SEQUENCE (S. B. Nagl)
CH 6. PROTEIN STRUCTURE COMPARISON (I.
Sillitoe and C. Orengo)
CH 7. PROTEIN STRUCTURE CLASSIFICATIONS (F. Pearl and C. Orengo)
CH 8. COMPARATIVE MODELING (A. C. R. Martin)
CH 9. PROTEIN STRUCTURE PREDICTION (D. T. Jones)
CH 10. FROM PROTEIN STRUCTURE TO FUNCTION (A. E. Todd)
CH 11. FROM STRUCTURE-BASED GENOME ANNOTATION TO UNDERSTANDING GENES AND
PROTEINS (S. A. Teichmann)
CH 12. GLOBAL APPROACHES FOR STUDYING PROTEIN-PROTEIN INTERACTIONS (S.A.
Teichmann)
CH 13. PREDICTING THE STRUCTURE OF PROTEIN-BIOMOLECULAR INTERACTIONS (R.M.
Jackson)
CH 14. EXPERIMENTAL USE OF DNA ARRAYS (P. Kellam and X. Liu)
CH 15. MINING GENE EXPRESSION DATA (X. Liu and P. Kellam)
CH 16. PROTEOMICS (M. P. Weir, P. Blackstock and R. M. Twyman)
CH 17. DATA MANAGEMENT OF BIOLOGICAL INFORMATION (N. J. Martin )
CH 18. INTERNET TECHNOLOGIES FOR BIOINFORMATICS (A. C. R. Martin)
|
ISBN: 1859960545
Published: Dec 2002
Series: Advanced Texts
Paperback; 320 pages
114 b/w & colour line drawings
?29.99
BIOS Scientific Publishers
|
|
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57
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Daniel Sorensen,
Daniel
Gianola
|
Likelihood, Bayesian and MCMC Methods in Quantitative
Genetics
|
I.
Review of Probability and Distribution Theory
?
Probability and Random Variables
?
Functions of Random Variables
II.
Inference Methods
?
An Introduction to Likelihood Inference
?
Further Topics in Likelihood Inference
?
An Introduction to Bayesian Inference
?
Bayesian Analysis of Linear Models
?
The Prior Distribution and Bayesian Analysis
?
Bayesian Assessment of Hypotheses and Models
?
Approximate Methods of Inference Via the EM Algorithm
III.
Markov Chain Monte Carlo Methods
?
An Overview of Discrete Markov Chains
?
Markov Chain Monte
Carlo
?
Implementation and Analysis of MCMC Samples
IV.
Applications in Quantitative Genetics
?
Gaussian and Thick-tailed Linear Models
?
Threshold Models for Categorical Respomses
?
Bayesian Analysis of Longitudinal Data
?
Segregation and QTL Analysis
References.
|
Price: $89.95
760 pages , 6 1/8 x 9 , hardcover
ISBN: 0-387-95440-6, published 2002
Springer-Verlag
|
|
|
58
|
Eric Marland,
?John Wagner
John
Tyson
|
Computational Cell Biology
|
?
Preface
?
Dynamic Phenomena in Cells
?
Voltage Gated Ionic Currents
?
Transporters and Pumps
?
Fast and Slow Time Scales
?
Whole Cell Models
?
Intercellular Communication
?
Spatial Modeling
?
Modeling Intracellular Calcium Waves and Sparks
?
Biochemical Oscillations
?
Cell Cycle Controls
?
Modeling the Stochastic Gating of Ion Channels
?
Molecular Motors: Theory
?
Molecular Motors: Examples
?
Appendices
|
Price: $59.95
488 pages , 7 X 9 1/4, 210 illus., hardcover
ISBN: 0-387-95369-8, published 2002
Springer-Verlag
|
|
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59
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Terry Speed
|
Statistical Analysis of Gene Expression Microarray Data
|
?
MODEL-BASED ANALYSIS OF OLIGONUCLEOTIDE ARRAYS AND ISSUES IN
cDNA MICROARRAY ANALYSIS, Cheng Li, George C. Tseng, and Wing Hung Wong
?
DESIGN AND ANALYSIS OF COMPARATIVE MICROARRAY EXPERIMENTS, Yee
Hwa Yang and Terry Speed
?
CLASSIFICATION IN MICROARRAY EXPERIMENTS, \ Sandrine Dudoit and
Jane Fridlyand
?
CLUSTERING MICROARRAY DATA, Hugh Chipman, Trevor J. Hastie, and
Robert Tibshirani
?
REFERENCES
?
INDEX
|
Price: $69.95
ISBN: 1584883278
Publication Date: 3/26/2003
Number of Pages: 240
Chapman & Hall/CRC Press
|
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60
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Sorin Draghici
|
Data Analysis Tools for DNA Microarrays
|
?
PREFACE
?
INTRODUCTION
?
MICROARRAYS
?
IMAGE PROCESSING
?
ELEMENTS OF STATISTICS
?
STATISTICAL HYPOTHESIS TESTING
?
CLASSICAL APPROACHES TO DATA ANALYSIS
?
ANALYSIS OF VARIANCE - ANOVA
?
EXPERIMENT DESIGN
?
MULTIPLE COMPARISONS
?
ANALYSIS AND VISUALIZATION TOOLS
?
CLUSTER ANALYSIS
?
DATA PRE-PROCESSING AND NORMALIZATION
?
METHODS FOR SELECTING DIFFERENTIALLY REGULATED GENES
?
ANOVA
?
FUNCTIONAL ANALYSIS AND BIOLOGICAL INTERPRETATION OF MICROARRAY
DATA
?
FOCUSED MICROARRAYS - COMPARISON AND SELECTION
?
COMMERCIAL APPLICATIONS
?
THE ROAD AHEAD
?
REFERENCES
|
List Price: $79.95
ISBN: 1584883154
Publication Date: 6/4/2003
Number of Pages: 512
Chapman & Hall/CRC Press
|
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61
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Jonathan Pevsner
|
Bioinformatics and Functional Genomics
|
?
PART I: ANALYZING DNA, RNA, AND PROTEIN SEQUENCES IN DATABASES.
?
1. Introduction.
?
2. Access to Sequence Data and Literature Information.
?
3. Pairwise Sequence Alignment.
?
4. Basic Local Alignmnet Search Tool (BLAST).
?
5. Advanced BLAST Searching.
?
PART II: GENOMEWIDE ANALYSIS OF RNA AND PROTEIN.
?
6. Bioinformatic Approaches to Gene Expression.
?
7. Gene Expression: Microarrays Data Analysis.
?
8. Protein Analysis and Proteomics.
?
9. Protein Structure.
?
10. Multiple Sequence Alignment.
?
11. Molecular Phylogeny and Evolution.
?
PART III: GENOME ANALYSIS.
?
12. Completed Genomes and the Tree of Life.
?
13. Completed Genomes: Viruses.
?
14. Completed Genomes: Bacteria and Archaea.
?
15. Eukaryotic Genomes: Fungi
?
16. Eukaryotic Genomes: From Parasites to Primates.
?
17. The Human Genome.
?
18. Human Disease.
|
ISBN: 0-471-21004-8
Paperback
753 pages
November 2003
?56.50 / ?78.30
http://www.bioinfbook.org/
|
|
|
62
|
Gary Fogel
?and
David Corne
?(Editors)
|
Evolutionary Computation in Bioinformatics
|
?
PART I - Introduction to the Concepts of Bioinformatics and
Evolutionary Computation
?
Chapter 1. An Introduction to Bioinformatics for Computer
Scientists By David W. Corne and Gary B. Fogel
?
Chapter 2. An Introduction to Evolutionary Computation for
Biologists By Gary B. Fogel and David W. Corne
?
PART II - Sequence and Structure Alignment
?
Chapter 3. Determining Genome Sequences from Experimental Data
Using Evolutionary Computation ?By
Jacek Blazewic and Marta Kasprzak
?
Chapter 4. Protein Structure Alignment Using Evolutionary
Computation ?By Joseph D. Szustakowski
and Zhipeng Weng
?
Chapter 5. Using Genetic Algorithms for Pairwise and Multiple
Sequence Alignments By C?dric Notredame
?
PART III - Protein Folding
?
Chapter 6. On the Evolutionary Search for Solutions to the
Protein Folding Problem By Garrison W. Greenwood and Jae-Min Shin
?
Chapter 7. Toward Effective Polypeptide Structure Prediction
with Parallel Fast Messy Genetic Algorithms By Gary B. Lamont and Laurence D.
Merkle
?
?
Chapter 8. Application of Evolutionary Computation to Protein
Folding with Specialized Operators By Steffen Schulze-Kremer
?
PART IV - Machine Learning and Inference
?
Chapter 9. Identification of Coding Regions in DNA Sequences
Using Evolved Neural Networks By Gary B. Fogel, Kumar Chellapilla, and David
B. Fogel
?
Chapter 10. Clustering Microarray Data with Evolutionary
Algorithms By Emanuel Falkenauer and Arnaud Marchand
?
Chapter 11. Evolutionary Computation and Fractal Visualization
of Sequence Data By Dan Ashlock and Jim Golden
?
Chapter 12. Identifying Metabolic Pathways and Gene Regulation
Networks with Evolutionary Algorithms By Junji Kitagawa and Hitoshi Iba
?
Chapter 13. Evolutionary Computational Support for the
Characterization of Biological Systems By Bogdan Filipic and Janez Strancar
?
PART V - Feature Selection
?
Chapter 14. Discovery of Genetic and Environmental Interactions
in Disease Data Using Evolutionary Computation By Laetitia Jourdan, Clarisse
Dhaenens[AQ2], and El-Ghazali Talbi
?
Chapter 15. Feature Selection Methods Based on Genetic
Algorithms for in Silico Drug Design By Mark J. Embrechts, Muhsin Ozdemir,
Larry Lockwood, Curt Breneman, Kristin Bennet, Dirk Devogelaere, and Marcel
Rijkaert
?
Chapter 16. Interpreting Analytical Spectra with Evolutionary
Computation By Jem J. Rowland
?
Appendix: Internet Resources for Bioinformatics Data and Tools
|
ISBN: 1-55860-797-8
Book/Hardback
Measurements: 187 X 235 mm
Pages: 393
Imprint: Morgan Kaufmann
Publication Date: 27 September 2002
Price: ?44.99
|
|
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63
|
Zo? Lacroix
?and
Terence Critchlow
(Editors)
|
Bioinformatics
Managing Scientific Data
|
?
1 Introduction ?By Zoe
Lacroix and Terence Critchlow
?
2 Challenges Faced in the Integration of Biological Information By
Su Yun Chung and John C. Wooley
?
3 A Practitioner's Guide to Data Management and Data Integration
in Bioinformatics By Barbara A. Eckman
?
4 Issues to Address While Designing a Biological Information
System By Zoe Lacroix
?
5 SRS: An Integration Platform for Databanksand Analysis Tools
in Bioinformatics By Thure Etzold, Howard Harris, and Simon Beaulah
?
6 The Kleisli Query System as a Backbone for Bioinformatics Data
Integration and Analysis By Jing Chen, Su Yun Chung, and Limsoon Wong
?
7 Complex Query Formulation Over Diverse Information Sources in
TAMBIS By Robert Stevens, Carole Goble, Norman W. Paton, Sean Bechhofer, Gary
Ng, Patricia Baker, and Andy Brass
?
8 The Information Integration System K2
By Val Tannen, Susan B. Davidson, and Scott Harker
?
9 P/FDM Mediator for a Bioinformatics Database Federation By Graham
J. L. Kemp and Peter M. D. Gray
?
10 Integration Challenges in Gene Expression Data Management By Victor
M. Markowitz, John Campbell, I-Min A. Chen, Anthony Kosky, Krishna
Palaniappan, and Thodoros Topaloglou
?
11 DiscoveryLink By Laura M. Haas, Barbara A. Eckman, Prasad
Kodali, Eileen T. Lin, Julia E. Rice, and Peter M. Schwarz
?
12 A Model-Based Mediator System for Scientific Data Management By
Bertram Ludascher, Amarnath Gupta, and Maryann E. Martone
?
13 Compared Evaluation of Scientific Data Management Systems By Zoe
Lacroix and Terence Critchlow
|
ISBN: 1-55860-829-X
Book/Hardback
Measurements: 187 X 235 mm
Pages: 441
Imprint: Morgan Kaufmann
Publication Date: 8 September 2003
Price: ?35.99
|
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