Database name |
Full name and/or description |
URL |
EXProt |
Sequences of proteins with experimentally verified function |
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NCBI Protein database |
All protein sequences: translated from GenBank and imported from other protein databases |
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PA-GOSUB |
Protein sequences from model organisms, GO assignment and subcellular localization |
|
PIR-PSD |
Protein information resource protein sequence database, has been merged into the UniProt knowledgebase |
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PIR-NREF |
PIR's non-redundant reference protein database |
|
PRF |
Protein research foundation database of peptides: sequences, literature and unnatural amino acids |
|
Swiss-Prot |
Now UniProt/Swiss-Prot: expertly curated protein sequence database, section of the UniProt knowledgebase |
|
TrEMBL |
Now UniProt/TrEMBL: computer-annotated translations of EMBL nucleotide sequence entries: section of the UniProt knowledgebase |
|
UniParc |
UniProt archive: a repository of all protein sequences, consisting only of unique identifiers and sequence |
|
UniProt |
Universal protein knowledgebase: merged data from Swiss-Prot, TrEMBL and PIR protein sequence databases |
|
UniRef |
UniProt non-redundant reference database: clustered sets of related sequences (including splice variants and isoforms) |
|
Database name |
Full name and/or description |
URL |
ASC |
Active sequence collection: biologically active peptides |
|
Blocks |
Alignments of conserved regions in protein families |
|
CSA |
Catalytic site atlas : active sites and catalytic residues in enzymes of known 3D structure |
|
COMe |
Co-ordination of metals etc.: classification of bioinorganic proteins ( metalloproteins and some other complex proteins) |
|
CopS |
Comprehensive peptide signature database |
|
eBLOCKS |
Highly conserved protein sequence blocks |
|
eMOTIF |
Protein sequence motif determination and searches |
|
Metalloprotein Site Database |
Metal-binding sites in metalloproteins |
|
O-GlycBase |
O- and C-linked glycosylation sites in proteins |
|
PDBSite |
3D structure of protein functional sites |
|
Phospho.ELM |
S/T/Y protein phosphorylation sites (formerly PhosphoBase) |
|
PROMISE |
Prosthetic centers and metal ions in protein active sites |
|
PROSITE |
Biologically significant protein patterns and profiles |
|
ProTeus |
Signature sequences at the protein N- and C-termini |
|
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|
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Database name |
Full name and/or description |
URL |
ADDA |
A database of protein domain classification |
|
CDD |
Conserved domain database, includes protein domains fromPfam, SMART, COG and KOG databases |
|
CluSTr |
Clusters of Swiss-Prot + TrEMBL proteins |
|
FunShift |
Functional divergence between the subfamilies of a protein domain family |
|
Hits |
A database of protein domains and motifs |
|
InterPro |
Integrated resource of protein families, domains and functional sites |
|
iProClass |
Integrated protein classification database |
|
PIRSF |
Family/superfamily classification of whole proteins |
http://pir.georgetown.edu/pirsf/ |
PRINTS |
Hierarchical gene family fingerprints |
|
Pfam |
Protein families: multiple sequence alignments and profile hidden Markov models of protein domains |
|
PRECISE |
Predicted and consensus interaction sites in enzymes |
|
ProDom |
Protein domain families |
|
ProtoMap |
Hierarchical classification of Swiss-Prot proteins |
|
ProtoNet |
Hierarchical clustering of Swiss-Prot proteins |
|
S4 |
Structure-based sequence alignments of SCOP superfamilies |
|
SBASE |
Protein domain sequences and tools |
|
SMART |
Simple modular architecture research tool: signalling, extracellular and chromatin-associated protein domains |
|
SUPFAM |
Grouping of sequence families into superfamilies |
|
SYSTERS |
Systematic re-searching and clustering of proteins |
|
TIGRFAMs |
TIGR protein families adapted for functional annotation |
|
|
|
|
Database name |
Full name and/or description |
URL |
AARSDB |
Aminoacyl-tRNA synthetase database |
|
ASPD |
Artificial selected proteins/peptides database |
|
BacTregulators |
Transcriptional regulators of AraC and TetR families |
|
CSDBase |
Cold shock domain-containing proteins |
|
CuticleDB |
Structural proteins of Arthropod cuticle |
|
DCCP |
Database of copper-chelating proteins |
|
DExH/D Family Database |
DEAD-box, DEAH-box and DExH-box proteins |
|
Endogenous GPCR List |
G protein-coupled receptors; expression in cell lines |
|
ESTHER |
Esterases and other alpha/beta hydrolase enzymes |
|
EyeSite |
Families of proteins functioning in the eye |
|
GPCRDB |
G protein-coupled receptors database |
|
gpDB |
G-proteins and their interaction with GPCRs |
|
Histone Database |
Histone fold sequences and structures |
|
Homeobox Page |
Homeobox proteins, classification and evolution |
|
Hox-Pro |
Homeobox genes database |
|
Homeodomain Resource |
Homeodomain sequences, structures and related genetic and genomic information |
|
HORDE |
Human olfactory receptor data exploratorium |
|
InBase |
Inteins (protein splicing elements) database: properties, sequences, bibliography |
|
KinG�Kinases in Genomes |
S/T/Y-specific protein kinases encoded in complete genomes |
|
Knottins |
Database of knottins�small proteins with an unusual �disulfide through disulfide ' knot |
|
LGICdb |
Ligand-gated ion channel subunit sequences database |
|
Lipase Engineering Database Sequence |
structure and function of lipases and esterases |
|
LOX-DB |
Mammalian, invertebrate, plant and fungal lipoxygenases |
|
MEROPS |
Database of proteolytic enzymes (peptidases) |
|
NPD |
Nuclear protein database |
|
NucleaRDB |
Nuclear receptor superfamily |
|
Nuclear Receptor Resource |
Nuclear receptor superfamily |
|
NUREBASE |
Nuclear hormone receptors database |
|
Olfactory Receptor Database |
Sequences for olfactory receptor-like molecules |
|
ooTFD |
Object-oriented transcription factors database |
|
PKR |
Protein kinase resource: sequences, enzymology, genetics and molecular and structural properties |
|
PLPMDB |
Pyridoxal-5 0 -phosphate dependent enzymes mutations |
|
ProLysED |
A database of bacterial protease systems |
|
Prolysis |
Proteases and natural and synthetic protease inhibitors |
|
REBASE |
Restriction enzymes and associated methylases |
|
Ribonuclease P Database |
RNase P sequences, alignments and structures |
|
RPG |
Ribosomal protein gene database |
|
RTKdb |
Receptor tyrosine kinase sequences |
|
S/MARt dB |
Nuclear scaffold/matrix attached regions |
|
Scorpion |
Database of scorpion toxins |
|
SDAP |
Structural database of allergenic proteins and food allergens |
|
SENTRA |
Sensory signal transduction proteins |
|
SEVENS |
7-transmembrane helix receptors (G-protein-coupled) |
|
SRPDB |
Proteins of the signal recognition particles |
|
TrSDB |
Transcription factor database |
|
VKCDB |
Voltage-gated potassium channel database |
|
Wnt Database |
Wnt proteins and phenotypes |
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