2. RNA sequence databases
Database name |
Full name and/or description |
URL |
16S and 23S rRNA Mutation Database |
16S and 23S ribosomal RNA mutations |
|
5S rRNA Database |
5S rRNA sequences |
|
Aptamer database |
Small RNA/DNA molecules binding nucleic acids, proteins |
|
ARED |
AU-rich element-containing mRNA database |
|
Mobile group II introns |
A database of group II introns, self-splicing catalytic RNAs |
|
European rRNA database |
All complete or nearly complete rRNA sequences |
|
GtRDB |
Genomic tRNA database |
|
Guide RNA Database |
RNA editing in various kinetoplastid species |
http://biosun.bio.tu-darmstadt.de/goringer/gRNA/gRNA.html |
HIV Sequence Database |
HIV RNA sequences |
|
HuSiDa |
Human siRNA database |
|
HyPaLib |
Hybrid pattern library : structural elements in classes of RNA |
|
IRESdb |
Internal ribosome entry site database |
|
microRNA Registry |
Database of microRNAs (small non-coding RNAs) |
|
NCIR |
Non-canonical interactions in RNA structures |
|
ncRNAs Database |
Non-coding RNAs with regulatory functions |
|
NONCODE |
A database of non-coding RNAs |
|
PLANTncRNAs |
Plant non-coding RNAs |
|
Plant snoRNA DB |
snoRNA genes in plant species |
|
PolyA_DB |
A database of mammalian mRNA polyadenylation |
|
PseudoBase |
Database of RNA pseudoknots |
|
Rfam |
Non-coding RNA families |
|
RISSC |
Ribosomal internal spacer sequence collection |
|
RNAdb |
Mammalian non-coding RNA database |
|
RNA Modification Database |
Naturally modified nucleosides in RNA |
|
RRNDB |
rRNA operon numbers in various prokaryotes |
|
siRNAdb |
siRNA database and search engine |
|
Small RNA Database |
Small RNAs from prokaryotes and eukaryotes |
|
SRPDB |
Signal recognition particle database |
|
SSU rRNA Modification Database |
Modified nucleosides in small subunit rRNA |
|
Subviral RNA Database |
Viroids and viroid-like RNAs |
|
tmRNA Website |
tmRNA sequences and alignments |
|
tmRDB |
tmRNA database |
|
tRNA sequences |
tRNA viewer and sequence editor |
|
UTRdb/UTRsite |
5' and 3' -UTRs of eukaryotic mRNAs |
|