BioTech FYI Center

RNA sequence databases

2. RNA sequence databases

Database name
Full name and/or description
URL
16S and 23S rRNA Mutation Database
16S and 23S ribosomal RNA mutations
5S rRNA Database
5S rRNA sequences
Aptamer database
Small RNA/DNA molecules binding nucleic acids, proteins
ARED
AU-rich element-containing mRNA database
Mobile group II introns
A database of group II introns, self-splicing catalytic RNAs
European rRNA database
All complete or nearly complete rRNA sequences
GtRDB
Genomic tRNA database
Guide RNA Database
RNA editing in various kinetoplastid species

http://biosun.bio.tu-darmstadt.de/goringer/gRNA/gRNA.html

HIV Sequence Database
HIV RNA sequences
HuSiDa
Human siRNA database
HyPaLib
Hybrid pattern library : structural elements in classes of RNA
IRESdb
Internal ribosome entry site database
microRNA Registry
Database of microRNAs (small non-coding RNAs)
NCIR
Non-canonical interactions in RNA structures
ncRNAs Database
Non-coding RNAs with regulatory functions
NONCODE
A database of non-coding RNAs
PLANTncRNAs
Plant non-coding RNAs
Plant snoRNA DB
snoRNA genes in plant species
PolyA_DB
A database of mammalian mRNA polyadenylation
PseudoBase
Database of RNA pseudoknots
Rfam
Non-coding RNA families
RISSC
Ribosomal internal spacer sequence collection
RNAdb
Mammalian non-coding RNA database
RNA Modification Database
Naturally modified nucleosides in RNA
RRNDB
rRNA operon numbers in various prokaryotes
siRNAdb
siRNA database and search engine
Small RNA Database
Small RNAs from prokaryotes and eukaryotes
SRPDB
Signal recognition particle database
SSU rRNA Modification Database
Modified nucleosides in small subunit rRNA
Subviral RNA Database
Viroids and viroid-like RNAs
tmRNA Website
tmRNA sequences and alignments
tmRDB
tmRNA database
tRNA sequences
tRNA viewer and sequence editor
UTRdb/UTRsite
5' and 3' -UTRs of eukaryotic mRNAs
Bioinformatics Analysis Tools Links