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Database name |
Full name and/or description |
URL |
ChEBI |
Chemical entities of biological interest |
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CSD |
Cambridge structural database: crystal structure information for organic and metal-organic compounds |
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HIC-Up |
Hetero-compound Information Centre� Uppsala |
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AANT |
Amino acid�nucleotide interaction database |
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Klotho |
Collection and categorization of biological compounds |
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LIGAND |
Chemical compounds and reactions in biological pathways |
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PDB-Ligand |
3D structures of small molecules bound to proteins and nucleic acids |
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Ligand Depot |
Ligand Depot is a data warehouse which integrates databases, services,
tools and methods related to small molecules bound to macromolecules.
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PubChem |
Structures and biological activities of small organic molecules |
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Database name |
Full name and/or description |
URL |
ArchDB |
Automated classification of protein loop structures |
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wwPDB |
Worldwide Protein Data Bank |
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PDBj |
Protein Data Bank Japan-the archive for macromolecular structures. |
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ASTRAL |
Sequences of domains of known structure, selected subsets and sequence� structure correspondences |
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BAliBASE |
A database for comparison of multiple sequence alignments |
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BioMagResBank |
NMR spectroscopic data for proteins and nucleic acids |
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CADB |
Conformational angles in proteins database |
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CATH |
Protein domain structures database |
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CE 3D |
protein structure alignments |
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CKAAPs DB |
Structurally similar proteins with dissimilar sequences |
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Dali |
Protein fold classification using the Dali search engine |
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Decoys �R' Us |
Computer-generated protein conformations |
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DisProt |
Database of Protein Disorder: proteins that lack fixed 3D structure in their native states |
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DomIns |
Domain insertions in known protein structures |
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DSDBASE |
Native and modeled disulfide bonds in proteins |
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DSMM |
Database of simulated molecular motions |
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eF-site |
Electrostatic surface of Functional site: electrostatic potentials and hydrophobic properties of the active sites |
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GenDiS |
Genomic distribution of protein structural superfamilies |
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Gene3D |
Precalculated structural assignments for whole genomes |
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GTD |
Genomic threading database: structural annotations of complete proteomes |
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GTOP |
Protein fold predictions from genome sequences |
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Het-PDB |
Navi Hetero-atoms in protein structures |
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HOMSTRAD |
Homologous structure alignment database: curated structure-based alignments for protein families |
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IMB Jena Image Library |
Visualization and analysis of 3D biopolymer structures |
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IMGT/3Dstructure-DB |
Sequences and 3D structures of vertebrate immunoglobulins, T cell receptors and MHC proteins |
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ISSD |
Integrated sequence�structure database |
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LPFC |
Library of protein family core structures |
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MMDB |
NCBI's database of 3D structures, part of NCBI Entrez |
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E-MSD |
EBI's macromolecular structure database |
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ModBase |
Annotated comparative protein structure models |
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MolMovDB |
Database of macromolecular movements: descriptions of protein and macromolecular motions, including movies |
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PALI |
Phylogeny and alignment of homologous protein structures |
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PASS2 |
Structural motifs of protein superfamilies |
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PepConfDB |
A database of peptide conformations |
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PDB |
Protein structure databank: all publicly available 3D structures of proteins and nucleic acids |
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PDB-REPRDB |
Representative protein chains, based on PDB entries |
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PDBsum |
Summaries and analyses of PDB structures |
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PDB_TM |
Transmembrane proteins with known 3D structure |
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Protein Folding Database |
Experimental data on protein folding |
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SCOP |
Structural classification of proteins |
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Sloop |
Classification of protein loops |
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Structure Superposition Database |
Pairwise superposition of TIM-barrel structures |
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SWISS-MODEL Repository |
Database of annotated 3D protein structure models |
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SUPERFAMILY |
Assignments of proteins to structural superfamilies |
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SURFACE |
Surface residues and functions annotated, compared and evaluated: a database of protein surface patches |
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TargetDB |
Target data from worldwide structural genomics projects |
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3D-GENOMICS |
Structural annotations for complete proteomes |
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TOPS |
Topology of protein structures database |
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