Online Visualization Tools

Online Visualization Tools

• Genome Channel

Online Programes

• Pratt - pattern discovery online
• Expression Profiler - online tool for expression profile clustering and sequence pattern discovery
• Database searches , Blitz ,...).
• Database searches at DISC (Japan) -- includes Fasta, BLAST, MPsrch and SRS Fasta
• Biologist's Control Panel (Baylor college of medicine).
• BCM Search Launcher searches, alignments.
• SAM , Sequence alignment and modeling system (using HMMs).
• Match sequence against PROSITE .
• AMAS Analysis of multiple alignments (Geoff Barton).
• MSA, Clustal W multiple sequence alignment.
• PredictProtein , Heidelberg.
• PSA , Protein Sequence Analysis: fits a structure model to your sequence.
• Sequence analysis tools , PDB, including multiple sequence alignment .
• MEME , motif discovery tool.
• Block Maker , at Fred Hutchinson Cancer Research Center.
• Bioinformation Search Center
• Longer list

Tools

• J-Express , a tool for analysing microarray gene expression data
• Clustal W , multiple sequence alignment
• Phylip , phylogenetic analysis.
• Pratt , pattern discovery.
• GCG , Wisconsin Sequence Analysis Package Program Manual.
• PROPHET , UNIX based software package for data analysis.
• RasMol , free program which displays molecular structures.
• MolScript , program for creating molecular graphics in the form of PostScript plot files.
• PairWise and SearchWise , Ewan Birney's excellent tools for sequence alignment and search.
• MEME , Multiple EM for Motif Elicitation