| |||||
|
|
How do I parse the CDS join or complement st... To see other biotech frequently asked questions,
please visit http://biotech.fyicenter.com/faq/
(Continued from previous question...) How do I parse the CDS join or complement statements in GenBank or EMBL files to get the sub-locations? For example, how can I get the the coordinates 45 and 122 in join(45..122,233..267) ? You could use foreach my $feature ($seqobj->top_SeqFeatures){
if ( $feature->location->isa('Bio::Location::SplitLocationI') and $feature->primary_tag eq 'CDS' ) {
foreach my $location ( $feature->location->sub_Location ) {
print $location->start , ".." , $location->end, "\n";
}
}
}
(Continued on next question...)
Other Frequently Asked Questions
|
||||