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Installing associated software MSE. To see other biotech frequently asked questions,
please visit http://biotech.fyicenter.com/faq/
(Continued from previous question...) Installing associated software MSE. A) a) from the anonymous cvs code. 1) Go to the mse directory
cd embassy/mse
2) make the configuration file
aclocal
autoconf
automake
3) configure and compile
./configure (use same options as you used to compile emboss)
make
make install
b) from MSE-1.0.0.tar.gz available from our FTP server ftp://emboss.open-bio.org/pub/EMBOSS/ in file MSE-1.0.0.tar.gz If you have done a full installation of EMBOSS using a 'prefix' e.g. you configured with ./configure --prefix=/usr/local/emboss and followed this with a 'make install' then: 1) gunzip and untar the file anywhere
gunzip MSE-1.0.0.tar.gz
tar xvf MSE-1.0.0.tar
2) go into the mse directory
cd MSE-1.0.0
3) configure using the same prefix and compile [e.g.]:
./configure --prefix=/usr/local/emboss
make
make install
N.B. If you configured without using a prefix but did do a 'make install' (or specified a prefix of /usr/local, which amounts to the same thing) then you must configure using:
./configure --prefix=/usr/local --enable-localforce
If, on the other hand, you did not do a 'make install' then: 1) Go to the emboss directory
cd EMBOSS-2.10.0
2) make new directory embassy if it does not exist already.
mkdir embassy
3) Go into that directory
cd embassy
4) gunzip and untar the file
gunzip MSE-1.0.0.tar.gz
tar xvf MSE-1.0.0.tar
5) go into the mse directory
cd MSE-1.0.0
6) configure and compile
./configure (use same options as you used to compile emboss)
make
(Continued on next question...)
Other Frequently Asked Questions
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