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please visit http://biotech.fyicenter.com/faq/
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What type of
sequences can ClustalW align?
It can align either nucleotide or protein sequences. In
the case of nucleotide sequences, it will align them as they are input - the
program does not provide the option of specifying DNA strands. The EMBOSS tool
revseq can be used to reverse and/or complement nucleotide sequences.
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