Atom Biology General Molecule Tools Trial Virus

1 2 3 4 5 6 … > >>   Sort: Rank

Fetch Sequences from NCBI with Bio.Blast.NCBIWWW.qblast()
How to Fetch Sequences from NCBI with Bio.Blast.NCBIWWW.qblast()? The function qblast() in the Bio.Blast.NCBIWWW module allows you to call the online version of BLAST to fetch DNA or protein sequences from https://blast.ncbi.nlm.nih.gov /Blast.cgi.Currently the qblast() function only works with 5 BL... 2023-05-09, 210👍, 0💬

Parse PDB Entry with Bio.PDB.MMCIFParser.parser Module
How to Parse PDB Entry with Bio.PDB.MMCIFParser.parser.get _structure()function? Bio.PDB.MMCIFParser.parser.get _structure()function allows you to parse and any PDB (Protein Database) data files. 1. Download a PDB file in PDB format. fyicenter$ curl http://files.rcsb.org/view/1fa t.pdb> 1fat.... 2023-05-09, 197👍, 0💬

Calculate Pairwise Sequence Alignment
How to Calculate Pairwise Sequence Alignment? You can use the Bio.Align.PairwiseAligner() function to Calculate Pairwise Sequence Alignment. It uses the Needleman-Wunsch, Smith-Waterman, Gotoh (three-state), and Waterman-Smith-Beyer global and local pairwise alignment algorithms. Here is an example ... 2023-05-09, 188👍, 0💬

Pairwise Sequence Alignment Score Settings
How to change Pairwise Sequence Alignment Score Settings? Bio.Align.PairwiseAligner().al ign()uses a set of Alignment Score Settings to control how each possible alignment score is calculated. It then returns only those alignments that have the highest score. Here are the Alignment Score Settings th... 2023-05-09, 188👍, 0💬

Use Bio.SearchIO Module to Parse BLAST XML Result
How to Use Bio.SearchIO Module to Parse BLAST XML Result? The Bio.SearchIO module allows to parse sequence search result from different result format. 1. Try the following code to query the "nt" database under the "blastn" program with a given DNA sequence, which is reverse translateed from a protei... 2023-05-09, 186👍, 0💬

Too Many Results from align() Function
Why there are So Many Results from the align() Function? If you are using the default score settings, you may get a very large number of possible alignments. Here is an example using the first and the third sequences from the PF05371_seed.faa file. fyicenter$ python >>> from Bio... 2023-05-09, 185👍, 0💬

Molecule FYI-1002941
Molecule Summary: ID: FYI-1002941 Names: InChIKey: QNOYEQFIQLMSPD-UHFFFAOYSA-N SMILES: CS(=O)(=Nc1c(C(F)(F)F)c(=O)ccc 1=O)c2ccccc2ClReceived at FYIcenter.com on: 2023-04-29 2023-05-09, 196👍, 0💬

Molecule FYI-1002917
Molecule Summary: ID: FYI-1002917 Names: InChIKey: UUFVHNTZOLXKBR-UHFFFAOYSA-N SMILES: O=c2c(N1CCOCC1)c(C(F)(F)F)c(=O )c3ccccc23Received at FYIcenter.com on: 2023-04-26 2023-05-09, 178👍, 0💬

Molecule FYI-1002908
Molecule Summary: ID: FYI-1002908 Names: InChIKey: VQBIRARUDUXDIJ-UHFFFAOYSA-N SMILES: COC(=O)c1cc(S(N)(=O)=O)c(Cl)cc 1Sc2cccc3ccccc23Received at FYIcenter.com on: 2023-04-25 2023-05-09, 172👍, 0💬

Molecule FYI-1002896
Molecule Summary: ID: FYI-1002896 Names: InChIKey: RDMRYOCVRCBAOX-UHFFFAOYSA-N SMILES: NC(=O)c1cc(S(N)(=O)=O)c(Cl)cc1 NC2CCCCCCC2Received at FYIcenter.com on: 2023-04-25 2023-05-09, 169👍, 0💬

Molecule FYI-1002943
Molecule Summary: ID: FYI-1002943 Names: InChIKey: GOKLHUJEFDHMIY-UHFFFAOYSA-N SMILES: O=c1ccc(=O)c(C(F)(F)F)c1N2CCOC C2Received at FYIcenter.com on: 2023-04-29 2023-05-09, 168👍, 0💬

Molecule FYI-1002915
Molecule Summary: ID: FYI-1002915 Names: InChIKey: OSMUSGBERYXRFZ-MHWRWJLKSA-N SMILES: Oc1ccccc1c2nnc(S)n2/N=C/c3cccc c3Received at FYIcenter.com on: 2023-04-26 2023-05-09, 166👍, 0💬

Molecule FYI-1002900
Molecule Summary: ID: FYI-1002900 Names: InChIKey: XUXDCUQYQUMQNX-UHFFFAOYSA-N SMILES: NS(=O)(=O)c2cc(C(=O)O)c(SCCc1c cccc1)cc2ClReceived at FYIcenter.com on: 2023-04-25 2023-05-09, 165👍, 0💬

Molecule FYI-1002901
Molecule Summary: ID: FYI-1002901 Names: InChIKey: YEZJTTVQWKXURB-UHFFFAOYSA-N SMILES: NC(=O)c1cc(S(N)(=O)=O)c(Cl)cc1 SCCc2ccccc2Received at FYIcenter.com on: 2023-04-25 2023-05-09, 165👍, 0💬

Molecule FYI-1002930
Molecule Summary: ID: FYI-1002930 Names: InChIKey: HOKKPVIRMVDYPB-GXDHUFHOSA-N SMILES: N#C/N=C\\1SCCN1Cc2ccc(Cl)nc2 Received at FYIcenter.com on: 2023-04-27 2023-05-09, 163👍, 0💬

Molecule FYI-1002924
Molecule Summary: ID: FYI-1002924 Names: InChIKey: WCXDHFDTOYPNIE-RIYZIHGNSA-N SMILES: C/C(=N\\C#N)N(C)Cc1ccc(Cl)nc1 Received at FYIcenter.com on: 2023-04-27 2023-05-09, 161👍, 0💬

Molecule FYI-1002935
Molecule Summary: ID: FYI-1002935 Names: InChIKey: LLIPPLNBWFRKIA-UHFFFAOYSA-N SMILES: CC(=O)NCCc3cn(CCNS(=O)(=O)c1cc c(C)cc1Cc2ccc(C)cc2)c4ccccc34Received at FYIcenter.com on: 2023-04-29 2023-05-09, 161👍, 0💬

Molecule FYI-1002942
Molecule Summary: ID: FYI-1002942 Names: InChIKey: IGNYKOSMHUUZJZ-UHFFFAOYSA-N SMILES: CCCCCCCCCCC(=O)N(O)CCCNC(=O)CC (O)(CC(=O)NCCCN(O)C(C)=O)C(=O) OReceived at FYIcenter.com on: 2023-04-29 2023-05-09, 161👍, 0💬

Molecule FYI-1002927
Molecule Summary: ID: FYI-1002927 Names: InChIKey: QOIYTRGFOFZNKF-UHFFFAOYSA-N SMILES: O=C2C=C(N(Cc1ccc(Cl)nc1)CC(F)F )CO2Received at FYIcenter.com on: 2023-04-27 2023-05-09, 160👍, 0💬

Molecule FYI-1002909
Molecule Summary: ID: FYI-1002909 Names: InChIKey: RGVSVXSVUKSDKX-UHFFFAOYSA-N SMILES: COC(=O)c1cc(S(N)(=O)=O)c(Cl)cc 1S(=O)(=O)c2cccc3ccccc23Received at FYIcenter.com on: 2023-04-25 2023-05-09, 159👍, 0💬

Molecule FYI-1002926
Molecule Summary: ID: FYI-1002926 Names: InChIKey: ZVQOOHYFBIDMTQ-UHFFFAOYSA-N SMILES: CC(c1ccc(C(F)(F)F)nc1)S(C)(=O) =NC#NReceived at FYIcenter.com on: 2023-04-27 2023-05-09, 158👍, 0💬

Molecule FYI-1002934
Molecule Summary: ID: FYI-1002934 Names: InChIKey: NMKGQIZZCGSFBF-UHFFFAOYSA-N SMILES: CSCCC(NC(=O)C(CCCNC(=N)N)NC(=O )C(CC(=O)O)NC(=O)C(CCCNC(=N)N) NC(=O)C(CCCNC(=N)N)NC(=O)C(C)N C(=O)C(CO)NC(=O)C(CCC(N)=O)NC( =O)C(CCC(N)=O)NC(=O)C1CCCN1C(= O)C2CCCN2C(=O)C(C)NC(=O)CNC(=O )C(CCC(=O)O)NC(=O)C3CCC(=O)N3) C(=... 2023-05-09, 158👍, 0💬

Molecule FYI-1002944
Molecule Summary: ID: FYI-1002944 Names: InChIKey: SVGVRYASUYZHDK-OWQUTOFXSA-M SMILES: NCCCCCN1O[Fe]2O/N=C\\CCCCNC(=O )CCC(=O)N(CCCCCNC(=O)CCC1=O)O2Received at FYIcenter.com on: 2023-04-29 2023-05-09, 158👍, 0💬

Molecule FYI-1002912
Molecule Summary: ID: FYI-1002912 Names: InChIKey: YTAOBBFIOAEMLL-WYMLVPIESA-N SMILES: N#C/C(=C\\2SCC(c1ccc(Cl)cc1Cl) S2)n3ccnc3Received at FYIcenter.com on: 2023-04-25 2023-05-09, 157👍, 0💬

1 2 3 4 5 6 … > >>   Sort: Rank

Atom Biology General Molecule Tools Trial Virus