3Dmol.js FAQ

Q

Where to find 3Dmol.js FAQ (Frequently Asked Questions)? I want to learn more about 3Dmol.js JavaScript library.

✍: FYIcenter.com

A

Here is a large collection of answers to frequently asked questions compiled by FYIcenter.com team about 3Dmol.js JavaScript library:

Getting Started with 3Dmol.js

What Is 3Dmol.js Library

Use the Online Version of 3Dmol.js Library

Install 3Dmol.js Library Locally

Display 3-D Molecule Structure with 3Dmol.js

Display Protein Structure with 3Dmol.js

Use of Anonymous Function for 3Dmol.js

"new window.ResizeObserver(this.resize)" Error

Difference between 3Dmol.js and 3Dmol-min.js

Download 3Dmol.js Source Code

Using Online Server of 3Dmol Viewer

What Is Online Server of 3Dmol Viewer

URL to Start Online 3Dmol Viewer

URL Parameters for 3Dmol Viewer

"pdb=..." - Load PDB Data in 3Dmol Viewer

"style=..." - Specify Display Style in 3Dmol Viewer

"select=..." - Select Substructure in 3Dmol Viewer

"select=resi:..." - Select Protein Residues by Numbers

"style={...}:..." - Specify Style Attributes

"style={...};{...}" - Specify Multiple Styles

"surface={...}" - Specify Surface Properties

"labelres={...}" - residue Label Properties

"cid={PubChem_CID}" - Load Molecule from PubMed

"url={URL}" - Load Molecule from URL

UI Components of Online 3Dmol Viewer

Hosting Online 3Dmol Viewer

Install Online 3Dmol Viewer on Linux

Start Online 3Dmol Viewer on Linux

Code Bug in server.py in 3Dmol Source Code

Missing 3Dmol-min.js on Local 3Dmol Server

Using Embedded 3Dmol Viewer

What Is Embedded 3Dmol Viewer

Assign Embedded 3Dmol Viewer to DIV

Multiple Selections with Embedded 3Dmol Viewer

3Dmol.js Bug - data-ui=true Impacts on Selection

Load Data by URL into Embedded 3Dmol Viewer

Load Data from Another HTML Element

UI Components of Embedded 3Dmol Viewer

UI Bug in Embedded 3Dmol Viewer

Play with Embedded 3Dmol Viewer

3Dmol.js Classes and API

$3Dmol Namespace and Static Methods

$3Dmol.download('pdb:...', ...) - Download PDB Protein

$3Dmol.download('cid:...', ...) - Download CID Molecule

GLViewer Class and Instance Methods

addBox() - Create 3D Boxes

addLabel() - Create Text Labels

addSphere() - Create Spheres

addModel() - Add Model from Data

⇒ Getting Started with 3Dmol.js

2024-07-30, 2859🔥, 1💬

💬 2024-07-30 hjkbyi: 174076 -OEChem-07302401143D 19 19 0 0 0 0 0 0 0999 V2000 -0.6643 0.0918 -0.2806 N 0 0 0 0 0 0 0 0 0 0 0 0 1.4486 -0.2071 0.0377 ...

Molecule FYI-1001829
Molecule Summary: ID: FYI-1001829 SMILES: F/C=C/F Received at FYIcenter.com on: 2022-12-19 2023-01-06, 1708🔥, 0💬

Molecule FYI-1001833
Molecule Summary: ID: FYI-1001833 SMILES: COC(C=C1)=CC=C1CNC[C@@H](C[C@@ H]2CC3)N3C[C@@H]2C4=CC(C5=CC6= CC=CC=C6C=C5)=NN4CReceived at FYIcenter.com on: 2022-12-22 2023-01-06, 1701🔥, 0💬

Molecule FYI-1001832
Molecule Summary: ID: FYI-1001832 SMILES: COc1ccc(Cl)cc1C(=O)NCCc1ccc(cc 1)S(=O)(=O)[NH2+]C(=O)NC1CCCCC 1Received at FYIcenter.com on: 2022-12-21 2023-01-06, 1657🔥, 0💬

Molecule FYI-1001830
Molecule Summary: ID: FYI-1001830 SMILES: C1=CC=C(C=C1)I=O Received at FYIcenter.com on: 2022-12-20 2023-01-06, 1648🔥, 0💬

Display 3-D Molecule Structure with 3Dmol.js
How to display a 3-D molecule structure with 3Dmol.js? If you have a 3-D molecule structure stored in SDF format, you can follow these steps to load and display it with the 3Dmol.js library. 1. Create an HTML file, Display-Molecule.html, with the following code. The molecule's SDF data is hidden in ... 2022-12-24, 1319🔥, 0💬

Getting Started with 3Dmol.js
Where to find FAQ (Frequently Asked Questions) on Getting Started with 3Dmol.js? Here is a list of tutorials to answer many frequently asked questions compiled by FYIcenter.com team on Getting Started with 3Dmol.js. What Is 3Dmol.js Library Use the Online Version of 3Dmol.js Library Install 3Dmol.js... 2022-12-24, 948🔥, 0💬

What Is 3Dmol.js Library
What Is 3Dmol.js Library? 3Dmol.js is an object-oriented, WebGL based JavaScript library for online molecular visualization - No Java required! With 3Dmol.js, you can add beautifully rendered molecular visualizations to your web applications. Main features of 3Dmol.js are: support for pdb, sdf, mol2... 2022-12-24, 792🔥, 0💬

Use the Online Version of 3Dmol.js Library
How to use the online version of the 3Dmol.js Library to draw a graphical object? I don't want to install the library locally. Yes, you can follow these steps to the online version of the 3Dmol.js library to draw graphical objects. The online version is located at https://3Dmol.csb.pitt.edu/bui ld/3D... 2022-12-24, 708🔥, 0💬

Install 3Dmol.js Library Locally
How to install the 3Dmol.js library locally on my own Web server? If you want use a local copy of the 3Dmol.js library, you can follow these steps. 1. Download a copy of the 3Dmol.js library: fyicenter$ curl https://3Dmol.csb.pitt.edu/bui ld/3Dmol-min.js> 3Dmol-min.js 2. Create an HTML file, ... 2022-12-24, 676🔥, 0💬

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