"surface={...}" - Specify Surface Properties

Q

How to turn on and specify surface properties using the "surface={...}" URL parameter in the Online 3Dmol Viewer?

✍: FYIcenter.com

A

You can use the surface={key:value;key:value;...} URL parameter to turn on the Van der Waals surface with given properties.

For example, the following URL turns on the Van der Waals surface with default properties:

https://3dmol.org/viewer.html?pdb=4KW4&surface=

The following URL turns on the Van der Waals surface with 2 given properties:

https://3dmol.org/viewer.html?pdb=4KW4&style=cartoon&surface=opacity:0.5;colorscheme:chain

Online 3Dmol Viewer - Van der Waals Surface

⇒ "labelres={...}" - residue Label Properties

⇐ "style={...};{...}" - Specify Multiple Styles

⇑ Using Online Server of 3Dmol Viewer

⇑⇑ 3Dmol.js FAQ

2023-09-07, 1597🔥, 0💬

"style={...}:..." - Specify Style Attributes
How to Specify Style Attributes using the "style={...}:...,..." URL parameter in the Online 3Dmol Viewer? Style Attributes can be specified as a comma separated list of "key~value" tokens. For example, the following URL provided 3 style attributes for the "carton" style: https://3dmol.org/viewer.htm.. . 2023-09-07, 1898🔥, 0💬

"labelres={...}" - residue Label Properties
How to turn on and specify residue label properties using the "labelres={...}" URL parameter in the Online 3Dmol Viewer? You can use the labelres={key:value;key:value; ...}URL parameter to turn on residue labels with given properties. For example, the following URL turns on residue labels with defau... 2023-09-07, 1840🔥, 0💬

"style=..." - Specify Display Style in 3Dmol Viewer
How to specify display style in the Online 3Dmol Viewer? You can use the style={line|cross|cartoon|stic k|sphere}URL parameter to specify the display style for the selected substructures in the Online 3Dmol Viewer. https://3dmol.org/viewer.html? ...style={line|cross|cartoon|s tick|sphere}For example,... 2023-01-06, 1765🔥, 0💬

"select=..." - Select Substructure in 3Dmol Viewer
How to select substructure in the Online 3Dmol Viewer? You can use the select={Selection} URL parameter to select a substructure in the loaded molecule and specify a different style than the whole molecule. https://3dmol.org/viewer.html? select={Selection}&sty le={Style}&select={Sel ect... 2023-09-07, 1669🔥, 0💬

"style={...};{...}" - Specify Multiple Styles
How to Specify Multiple Styles using the "style={...};{...}" URL parameter in the Online 3Dmol Viewer? If you want overlay the selected structure in multiple styles, you can provide a semicolons separated list of styles. For example, the following URL displays the protein structure overlaid in 2 sty... 2023-09-07, 1631🔥, 0💬

"surface={...}" - Specify Surface Properties
How to turn on and specify surface properties using the "surface={...}" URL parameter in the Online 3Dmol Viewer? You can use the surface={key:value;key:value;. ..}URL parameter to turn on the Van der Waals surface with given properties. For example, the following URL turns on the Van der Waals surf... 2023-09-07, 1598🔥, 0💬

"select=resi:..." - Select Protein Residues by Numbers
How to select Protein Residues by Numbers using the "select=resi:..." URL parameter in the Online 3Dmol Viewer? There are different ways to select Protein Residues by Numbers: select=resi:{number} - Select single residues. select=resi:{number-number} - Select multiple residues in a range. select=res... 2023-09-07, 1593🔥, 0💬

3Dmol.js Classes and API
Where to find FAQ (Frequently Asked Questions) on 3Dmol.js Classes and API? Here is a list of tutorials to answer many frequently asked questions compiled by FYIcenter.com team on 3Dmol.js Classes and API. $3Dmol Namespace and Static Methods $3Dmol.download('pdb:...', ...) - Download PDB Protein $3D... 2023-09-07, 1531🔥, 0💬

addBox() - Create 3D Boxes
How to create 3D Boxes with 3Dmol.js addBox() methods? viewer.addBox() method in the $3Dmol.GLViewer class allows you to create 3D box objects. Here is the signature of the addBox() method: {$3Dmol.GLViewer} addBox({BoxSpec} spec) -> {$3Dmol.GLShape} Here is an HTML code example, Draw-Box.htm... 2023-09-07, 1512🔥, 0💬

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