Using Online Server of 3Dmol Viewer

Q

Where to find FAQ (Frequently Asked Questions) on Using Online Server of 3Dmol Viewer?

✍: FYIcenter.com

A

Here is a list of tutorials to answer many frequently asked questions compiled by FYIcenter.com team on Using Online Server of 3Dmol Viewer.

What Is Online Server of 3Dmol Viewer

URL to Start Online 3Dmol Viewer

URL Parameters for 3Dmol Viewer

"pdb=..." - Load PDB Data in 3Dmol Viewer

"style=..." - Specify Display Style in 3Dmol Viewer

"select=..." - Select Substructure in 3Dmol Viewer

"select=resi:..." - Select Protein Residues by Numbers

"style={...}:..." - Specify Style Attributes

"style={...};{...}" - Specify Multiple Styles

"surface={...}" - Specify Surface Properties

"labelres={...}" - residue Label Properties

"cid={PubChem_CID}" - Load Molecule from PubMed

"url={URL}" - Load Molecule from URL

UI Components of Online 3Dmol Viewer

⇒ What Is Online Server of 3Dmol Viewer

⇐ Download 3Dmol.js Source Code

⇑⇑ 3Dmol.js FAQ

2023-09-07, 328🔥, 0💬

Difference between 3Dmol.js and 3Dmol-min.js
What is the difference between 3Dmol.js and 3Dmol-min.js? From code point of view, 3Dmol.js and 3Dmol-min.js are the same. But they are stored in different file formats: 1. 3Dmol-min.js is the minimized version of 3Dmol.js with all line breaks and other white spaces removed. 2. 3Dmol-min.js is 3 tim... 2022-12-24, 696🔥, 0💬

"pdb=..." - Load PDB Data in 3Dmol Viewer
How to load a protein structure with the PDB ID in the Online 3Dmol Viewer? You can use the pdb={PDB_ID} URL parameter to load protein data from https://www.rcsb.org/ in the Online 3Dmol Viewer. https://3dmol.org/viewer.html? pdb={PDB_ID}For example, enter the following URL in Web browser. You see t... 2023-01-06, 620🔥, 0💬

Display Protein Structure with 3Dmol.js
How to display a protein structure with 3Dmol.js? You can follow these steps to display a protein structure by loading an online PDB file. 1. Get URL of the online PDB file: https://files.rcsb.org/downloa d/1YCR.pdb2. Create an HTML file, View-PDB-Online.html, with the following code. The PDB file l... 2022-12-26, 488🔥, 0💬

URL to Start Online 3Dmol Viewer
What Is URL to Start the Online 3Dmol Viewer? You can use the following URL to the the Online 3Dmol Viewer: https://3dmol.csb.pitt.edu/vie wer.htmlThe 3Dmol Viewer will display a blank window with a menu icon. Click the menu icon, you can see 3 options to load the molecule data into the viewer: Sele... 2023-09-07, 427🔥, 0💬

"style=..." - Specify Display Style in 3Dmol Viewer
How to specify display style in the Online 3Dmol Viewer? You can use the style={line|cross|cartoon|stic k|sphere}URL parameter to specify the display style for the selected substructures in the Online 3Dmol Viewer. https://3dmol.org/viewer.html? ...style={line|cross|cartoon|s tick|sphere}For example,... 2023-01-06, 421🔥, 0💬

Install 3Dmol.js Library Locally
How to install the 3Dmol.js library locally on my own Web server? If you want use a local copy of the 3Dmol.js library, you can follow these steps. 1. Download a copy of the 3Dmol.js library: fyicenter$ curl https://3Dmol.csb.pitt.edu/bui ld/3Dmol-min.js> 3Dmol-min.js 2. Create an HTML file, ... 2022-12-24, 399🔥, 0💬

Download 3Dmol.js Source Code
How to download the source code of the 3Dmol.js library locally? If you are interested in reading the source code, examples and other resources of the 3Dmol.js library, you can follow these steps to download the source code package. 1. Go to 3Dmol.js Official Release Website . 2. Click "Source code ... 2023-09-05, 380🔥, 0💬

What Is Online Server of 3Dmol Viewer
What Is Online Server of 3Dmol Viewer? Online Server of 3Dmol Viewer is an online service provided by University of Pittsburgh. It allows you to view 3-D structures of molecules including proteins interactively using the 3Dmol.js library. Main features of Online Server of 3Dmol Viewer are: support f... 2023-09-07, 350🔥, 0💬

URL Parameters for 3Dmol Viewer
What URL Parameters are supported by the Online 3Dmol Viewer? When invoking the Online 3Dmol Viewer, you can add URL parameters to initialize the viewer using this syntax: https://3dmol.org/viewer.html? param1=value1&param2=v alue2&...The 3Dmol Viewer supports the following parameters... 2023-09-07, 344🔥, 0💬

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