"cid={PubChem_CID}" - Load Molecule from PubMed

Q

How to load a molecule structure with the CID in the Online 3Dmol Viewer?

✍: FYIcenter.com

A

You can use the cid={PubChem_CID} URL parameter to load a molecule structure from https://pubchem.ncbi.nlm.nih.gov/ in the Online 3Dmol Viewer.

https://3dmol.org/viewer.html?cid={PubChem_CID}

For example, enter the following URL in Web browser. You see the molecule structure of Aspirin is displayed in the 3Dmol Viewer.

https://3dmol.org/viewer.html?cid=2244&style=stick

Online 3Dmol Viewer - Load Molecule with CID

Note that the molecule structure data is loaded with the following PubMed API:

https://pubchem.ncbi.nlm.nih.gov/rest/pug/compound/cid/{CID}/SDF?record_type=3d

⇒ "url={URL}" - Load Molecule from URL

⇐ "labelres={...}" - residue Label Properties

⇑ Using Online Server of 3Dmol Viewer

⇑⇑ 3Dmol.js FAQ

2023-09-07, 310🔥, 0💬

"cid={PubChem_CID}" - Load Molecule from PubMed
How to load a molecule structure with the CID in the Online 3Dmol Viewer? You can use the cid={PubChem_CID} URL parameter to load a molecule structure from https://pubchem.ncbi.nlm.nih.g ov/in the Online 3Dmol Viewer. https://3dmol.org/viewer.html? cid={PubChem_CID}For example, enter the following U... 2023-09-07, 311🔥, 0💬

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How to create text labels with 3Dmol.js addSphere() methods? viewer.addSphere() method in the $3Dmol.GLViewer class allows you to create sphere objects. Here is the signature of the addSphere() method: {$3Dmol.GLViewer} addLabel(text, {LabelSpec} options, {AtomSelection} sel) -> {$3Dmol.Label... 2023-09-07, 264🔥, 0💬

"surface={...}" - Specify Surface Properties
How to turn on and specify surface properties using the "surface={...}" URL parameter in the Online 3Dmol Viewer? You can use the surface={key:value;key:value;. ..}URL parameter to turn on the Van der Waals surface with given properties. For example, the following URL turns on the Van der Waals surf... 2023-09-07, 263🔥, 0💬

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How to select Protein Residues by Numbers using the "select=resi:..." URL parameter in the Online 3Dmol Viewer? There are different ways to select Protein Residues by Numbers: select=resi:{number} - Select single residues. select=resi:{number-number} - Select multiple residues in a range. select=res... 2023-09-07, 262🔥, 0💬

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Where to find FAQ (Frequently Asked Questions) on Hosting Online 3Dmol Viewer? Here is a list of tutorials to answer many frequently asked questions compiled by FYIcenter.com team on Hosting Online 3Dmol Viewer. Install Online 3Dmol Viewer on Linux Start Online 3Dmol Viewer on Linux Code Bug in serv... 2023-09-07, 260🔥, 0💬

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How to create 3D Boxes with 3Dmol.js addBox() methods? viewer.addBox() method in the $3Dmol.GLViewer class allows you to create 3D box objects. Here is the signature of the addBox() method: {$3Dmol.GLViewer} addBox({BoxSpec} spec) -> {$3Dmol.GLShape} Here is an HTML code example, Draw-Box.htm... 2023-09-07, 256🔥, 0💬

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