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OBF (Open Bioinformatics Foundation) Tools
Where to find molecule FAQ (Frequently Asked Questions)? I want to learn more about OBF (Open Bioinformatics Foundation) and its software tools.
✍: FYIcenter.com
Here is a large collection of tutorials to answer many frequently asked questions
compiled by FYIcenter.com team about
OBF (Open Bioinformatics Foundation) and its software tools:
About OBF (Open Bioinformatics Foundation)
Biopython - Tools for Biological Computation
Double Stranded DNA, mRNA and Transcription
Single Sequence Record in FASTA Format
Single Sequence Record in GenBank Format
Play with the ls_orchid.fasta File
List NCBI Databases with Bio.Entrez.einfo()
Search NCBI Databases with Bio.Entrez.esearch()
Retrieve Record Summary with Bio.Entrez.esummary()
Fetch Sequences from NCBI with Bio.Entrez.efetch()
Search for Related Items in NCBI with Bio.Entrez.elink()
Global Query on All NCBI Databases with Bio.Entrez.egquery()
Search History with Bio.Entrez for Subsequent Calls
Fetch Sequences from SwissProt with Bio.ExPASy.get_sprot_raw()
Scan Prosite Databas with Bio.ExPASy.ScanProsite.scan()
Read Sequence Alignments with Bio.AlignIO
Calculate Substitutions in Alignments
Fetch Sequences from NCBI with Bio.Blast.NCBIWWW.qblast()
Use Bio.SearchIO Module to Parse BLAST XML Result
Parse PDB Entry with Bio.PDB.MMCIFParser.parser Module
Calculate Pairwise Sequence Alignment
Pairwise Sequence Alignment Score Settings
Too Many Results from align() Function
Biopython for Sequence Motif Analysis
What Is Sequence Motif Analysis
Create Motif With Biopython Bio.motifs Module
Motif Counts and Consensus with Bio.motifs
Read Motif in JASPAR Format with Bio.motifs
Motif PCM, PFM, PPM, PWM with Bio.motifs
Sequence Score against PSSM with Bio.motifs
Search for Motif Matches with Bio.motifs
Compare Motifs Using PSSM with Bio.motifs
BioJava - Java Bioinformatics Toolkit
BioJava Library Installation Options
Use BioJava with "Maven" Build Tool
BioPerl - Perl Bioinformatics Toolkit
BioPerl Modules Installation Options
HOWTO Documents at BioPerl.org
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