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Scan Prosite Database with Bio.ExPASy.ScanProsite.scan()
How to Scan Prosite Database with Bio.ExPASy.ScanProsite.scan() function?
✍: FYIcenter.com
Bio.ExPASy.ScanProsite.scan() function allows to scan the Prosite database with a given sequence.
Here is an example on how to Scan Prosite Database.
fyicenter$ python >>> from Bio.ExPASy import ScanProsite >>> sequence = ( ... "MEHKEVVLLLLLFLKSGQGEPLDDYVNTQGASLFSVTKKQLGAGSIEECAAKCEEDEEFT" ... "CRAFQYHSKEQQCVIMAENRKSSIIIRMRDVVLFEKKVYLSECKTGNGKNYRGTMSKTKN" ... ) >>> handle = ScanProsite.scan(seq=sequence) >>> result = ScanProsite.read(handle) >>> len(result) 1 >>> result[0] {'sequence_ac': 'USERSEQ1', 'start': 16, 'stop': 98, 'signature_ac': 'PS50948', 'score': '8.873', 'level': '0'}
⇒ Read Sequence Alignments with Bio.AlignIO
⇐ Fetch Sequences from SwissProt with Bio.ExPASy.get_sprot_raw()
2023-09-05, 579🔥, 0💬
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