Play with the Bio.Seq Module

Q

How to import the Bio.Seq module and use its functions?

✍: FYIcenter.com

A

Here are some examples on how to import the Bio.Seq module and use its functions.

1. Import the Bio.Seq module and create a Bio.Seq object.

fyicenter$ python

>>> from Bio.Seq import Seq
>>> my_seq = Seq("AGTACACTGGT")
>>> my_seq
Seq('AGTACACTGGT')

>>> print(my_seq)
AGTACACTGGT

2. Try complement() and reverse_complement() functions on the Bio.Seq object.

>>> my_seq.complement()
Seq('TCATGTGACCA')

>>> my_seq.reverse_complement()
Seq('ACCAGTGTACT')

⇒ Double Stranded DNA, mRNA and Transcription

⇐ Install Biopython

⇑ Biopython - Tools for Biological Computation

⇑⇑ OBF (Open Bioinformatics Foundation) Tools

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How to read a Single Sequence Record in FASTA Format? If you want to store additional information to a DNA or protein sequence, you can use the Bio.SeqRecord class, which contains the following properties: seq – The sequence itself as a Seq object. id – The primary ID used to identify the sequence. ... 2023-04-04, 1196🔥, 0💬

Play with the Bio.Seq Module
How to import the Bio.Seq module and use its functions? Here are some examples on how to import the Bio.Seq module and use its functions. 1. Import the Bio.Seq module and create a Bio.Seq object. fyicenter$ python >>> from Bio.Seq import Seq >>> my_seq = Seq... 2023-02-04, 1172🔥, 0💬

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