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Create Motif With Biopython Bio.motifs Module
How to Create Motif With Biopython Bio.motifs Module?
✍: FYIcenter.com
Biopython Bio.motifs Module allows you to create a motif object with a list of DNA or protein sequences. A motif object actually represents a sample set of sequences that matches a sequence motif pattern.
1. Create a motif object with a single sequence that matches the motif pattern of "TACAA".
fyicenter$ python >>> from Bio import motifs >>> m = motifs.create(["TACAA"]) >>> len(m) 5 >>> print(m) TACAA
2. Create a motif object with 7 sequences that matches the motif pattern of "[AT]A[CT][ACG][AC]".
>>> samples = [ ... "TACAA", ... "TACGC", ... "TACAC", ... "TACCC", ... "AACCC", ... "AATGC", ... "AATGC" ... ] >>> m = motifs.create(samples) >>> len(m) 5 >>> print(m) TACAA TACGC TACAC TACCC AACCC AATGC AATGC
⇒ Motif Counts and Consensus with Bio.motifs
⇐ What Is Sequence Motif Analysis
2023-07-11, 296🔥, 0💬
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