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How do I parse the CDS join or complement st... To see other biotech frequently asked questions,
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(Continued from previous question...) How do I parse the CDS join or complement statements in GenBank or EMBL files to get the sub-locations? For example, how can I get the the coordinates 45 and 122 in join(45..122,233..267) ? You could use foreach my $feature ($seqobj->top_SeqFeatures){ if ( $feature->location->isa('Bio::Location::SplitLocationI') and $feature->primary_tag eq 'CDS' ) { foreach my $location ( $feature->location->sub_Location ) { print $location->start , ".." , $location->end, "\n"; } } } (Continued on next question...)
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