| |||||
|
How do I tell BLAST to search multiple database ... To see other biotech frequently asked questions,
please visit http://biotech.fyicenter.com/faq/
(Continued from previous question...) How do I tell BLAST to search multiple database using Bio::Tools::Run::StandAloneBlast? Put the names of the databases in a variable. like so: my $dbs = '"/dba/BMC.fsa /dba/ALC.fsa /dba/HCC.fsa"'; my @params = ( d => "$dbs", program => "BLASTN", _READMETHOD => "Blast", outfile => "$dir/est.bls" ); my $factory = Bio::Tools::Run::StandAloneBlast->new(@params); my $seqio = Bio::SeqIO->new(-file=>'t/amino.fa',-format => 'Fasta' ); my $seqobj = $seqio->next_seq(); $factory->blastall($seqobj); (Continued on next question...)
Other Frequently Asked Questions
|
||||