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please visit http://biotech.fyicenter.com/faq/
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How do I get the complete spliced nucleotide sequence from the CDS section?
You can use the spliced_seq method. For example:
my $seq_obj = $db->get_Seq_by_id($gi);
foreach my $feat ( $seq_obj->top_SeqFeatures ) {
if ( $feat->primary_tag eq 'CDS' ) {
my $cds_obj = $feat->spliced_seq;
print "CDS sequence is ",$cds_obj->seq,"\n";
}
}
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