Atom Biology General Molecule Reaction Tools Trial Virus

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Stereochemistry with JSME (Molecule Editor in JavaScript)
Can JSME (Molecule Editor in JavaScript) be used to do Stereochemistry? Yes. JSME (Molecule Editor in JavaScript) can be used to stereochemistry. You can create a molecule structure with wedges and hatches provide stereoinformation on bonds. Here is an example with 1 wedge and 1 hatch: Molecule with... 2021-02-06, 1433🔥, 0💬

"babel ... -o svg -xi" - Show Atom Indices in SVG
How to show atom indices in a molecule SVG picture? I want to see in what order each atom is listed in the SMILES string. The SMILES string list each atom a molecule is a specific sequence. You can use the "-xi" option when generating the SVG file to show the index of each atom corresponding to the ... 2021-02-04, 1355🔥, 0💬

Molecule FYI-1000204
Molecule Summary: ID: FYI-1000204 SMILES: CC1=CC(=C(C=C1)OP(=O)(OC2=C(C= C(C=C2)C)C)OC3=C(C=C(C=C3)C)C) CReceived at FYIcenter.com on: 2020-12-12 2021-02-04, 2912🔥, 0💬

Molecule FYI-1000199
Molecule Summary: ID: FYI-1000199 SMILES: N[C@H]1CCN(Cc2ccn3ncncc23)C[C@ H]1OReceived at FYIcenter.com on: 2020-12-07 2021-02-04, 2869🔥, 0💬

Molecule FYI-1000203
Molecule Summary: ID: FYI-1000203 SMILES: CCCCCCCCCCO.CCCCCCCCO.CCCCCCO. C1=CC=C(C(=C1)C(=O)O)C(=O)OReceived at FYIcenter.com on: 2020-12-12 2021-02-04, 2834🔥, 0💬

Molecule FYI-1000202
Molecule Summary: ID: FYI-1000202 SMILES: CCCCCCOC(=O)C1=CC=CC=C1C(=O)OC CCCCCReceived at FYIcenter.com on: 2020-12-12 2021-02-04, 2744🔥, 0💬

Molecule FYI-1000201
Molecule Summary: ID: FYI-1000201 SMILES: CCCCCCOC(=O)CC(CC(=O)OCCCCCC)( OC(=O)CCC)C(=O)OCCCCCCReceived at FYIcenter.com on: 2020-12-12 2021-02-04, 2707🔥, 0💬

Molecule FYI-1000200
Molecule Summary: ID: FYI-1000200 SMILES: COc1cccc(Nc2ncnn3ccc(CN4CC[C@@ H](N)[C@H](O)C4)c23)c1Received at FYIcenter.com on: 2020-12-07 2021-02-04, 2693🔥, 0💬

Molecule FYI-1000198
Molecule Summary: ID: FYI-1000198 SMILES: (1S,3R,5R,6S,8S,10S,11R,13S,15 S,16R,18S,20S,21R,23R,25R,26S, 28R,30R,31R,32R,33R,34R,35S,36 S,37S,38S,39S,40S,41R,42R)-5,1 0,15,20,25,30-Hexakis(hydroxym ethyl)-2,4,7,9,12,14,17,19,22, 24,27,29-dodecaoxaheptacyclo[2 6.2.2.23,6.28,11.213,16.218,21 .223,26]dotetracon... 2021-02-04, 1932🔥, 0💬

cactus.nci.nih.gov/translate - Convert to/from SDF
What is cactus.nci.nih.gov/translate SDF translator? pubcactus.nci.nih.gov/translat eSDF translator allows you to translate SDF files from and to other types of files, including SMILES, SD, MOL, etc. SDF Online Tool - pubchem.ncbi.nlm.nih.gov   For more information, visit cactus.nci.nih.gov/translat... 2021-02-02, 4566🔥, 0💬

Molecule FYI-1000196
Molecule Summary: ID: FYI-1000196 SMILES: O=C(N(C(C(OC(=O)CCCCC(=O)OC)([ H])[H])([H])[H])[H])C2=C([N]1C (=NC(=C1C([H])([H])[H])C([H])( [H])[H])C(=C2[H])N(C(C3=C(C(=C (C(=C3C([H])([H])[H])[H])[H])[ H])C([H])([H])[H])([H])[H])[H] )[H].[H]Received at FYIcenter.com on: 2020-12-04 2021-01-09, 3183🔥, 0💬

Molecule FYI-1000197
Molecule Summary: ID: FYI-1000197 SMILES: CC(C)C1=CC=CC=C1.[CH-]1C=CC=C1 .F[Sb-](F)(F)(F)(F)F.[Fe+2]Received at FYIcenter.com on: 2020-12-07 2021-01-09, 2744🔥, 0💬

Substructure Search with SMARTS Expressions
How to use SMARTS expressions in a substructure search using "babel" commands? You can use SMARTS expressions in the "-s ..." option in "babel" commands to filter molecules that match given SMARTS expressions. Here are some examples: # C, C and O connected with single bonds fyicenter$ obabel "-:c1cc... 2021-01-09, 1754🔥, 0💬

Open Babel Documentation and Resources
Where can I find Open Babel documentations and resources? Here is a list of links to Open Babel documentations and resources. Open Babel Command Manuals and Tutorials - http://openbabel.org/wiki/Cate gory:GuidesOpen Babel v2.3.1 Documentation - "Open Babel, or how I learned to love the chemistry fil... 2021-01-09, 1452🔥, 0💬

Molecule FYI-1000190
Molecule Summary: ID: FYI-1000190 SMILES: Cc1cc(C)n2nc(C(=O)N/N=C/c3ccc4 c(c3)OCO4)nc2n1Received at FYIcenter.com on: 2020-11-11 2020-12-26, 2945🔥, 0💬

Molecule FYI-1000195
Molecule Summary: ID: FYI-1000195 SMILES: c1c(ccc(c1)CCC(CC(=O)CCc1ccc(c c1)O)OC)OReceived at FYIcenter.com on: 2020-12-02 2020-12-26, 2565🔥, 0💬

Molecule FYI-1000194
Molecule Summary: ID: FYI-1000194 SMILES: c3ccc2cc1ccccc1cc2c3 Received at FYIcenter.com on: 2020-12-01 2020-12-26, 2530🔥, 0💬

Molecule FYI-1000193
Molecule Summary: ID: FYI-1000193 SMILES: CH3COOH Received at FYIcenter.com on: 2020-11-27 2020-12-26, 2368🔥, 0💬

"babel --append ..." Command - Calculate Molecule Properties
How to use "babel --append ..." command to calculate Molecule Properties? The "--append ..." option of the "babel" command can be used to copy existing molecule properties from the input data source, and append them to the "title" field of output molecules. But the "--append ..." option can also be ... 2020-12-26, 2114🔥, 0💬

"babel" Command Option Argument Syntax
How to write "babel" command option argument properly? What's the difference between "-isdf" and "-i sdf"? There is no difference between "-isdf" and "-i sdf". Both are valid "babel" option "-i" with an argument of "sdf". If a "babel" command option takes an argument, you can specify the argument in... 2020-12-26, 1464🔥, 0💬

Molecule FYI-1000192
Molecule Summary: ID: FYI-1000192 SMILES: NS(=O)(=O)N Received at FYIcenter.com on: 2020-11-24 2020-12-22, 2656🔥, 0💬

Molecule FYI-1000191
Molecule Summary: ID: FYI-1000191 SMILES: C1CCCCCCCC1 Received at FYIcenter.com on: 2020-11-13 2020-12-22, 2544🔥, 0💬

Similarity Search with Open Babel
Where to find FAQ (Frequently Asked Questions) on Similarity Search with Open Babel? Here is a list of tutorials to answer many frequently asked questions compiled by FYIcenter.com team on Similarity Search with Open Babel. "babel -o fpt ..." Command - Similarity Search Fingerprint Types Supported i... 2020-12-22, 2076🔥, 0💬

Molecule FYI-1000188
Molecule Summary: ID: FYI-1000188 SMILES: Cl.CC1(C)N=C(N)N=C(N)N1OCCCc1c cccc1Received at FYIcenter.com on: 2020-11-09 2020-12-15, 2778🔥, 0💬

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Atom Biology General Molecule Reaction Tools Trial Virus