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Similarity Search with Open Babel
Where to find FAQ (Frequently Asked Questions) on Similarity Search with Open Babel? Here is a list of tutorials to answer many frequently asked questions compiled by FYIcenter.com team on Similarity Search with Open Babel. "babel -o fpt ..." Command - Similarity Search Fingerprint Types Supported i...
2020-12-22, 1292🔥, 0💬

List of File Formats Supported by Open Babel
How to get a list of File Formats Supported by Open Babel? You can use "babel -L formats" command to get a list of File Formats Supported by Open Babel: fyicenter$ babel -L formats abinit -- ABINIT Output Format [Read-only] acr -- ACR format [Read-only] adf -- ADF cartesian input format [Write-only]...
2020-07-15, 1278🔥, 0💬

"babel ... -o svg -xP300" Bug - width="px" height="px"
Why "babel ... -o svg -xP300" command is not able scale a molecule SVG image? The "babel ... -o svg -xP300" command has a code bug that results incorrect attributes, width="px" height="px", in the top level "svg" element. in both Open 2.3 and 2.4 releases. However, "obabel ... -o svg -xP300" command...
2020-07-22, 1256🔥, 0💬

Install JSME on Apache Web Server
How to install JSME on an Apache Web server? If you want to install JSME on a Web server for others to try it remotely, you can follow this tutorial to install it an an Apache Web server. 1. Follow the previous tutorial to download and install JSME on your local computer in the "./JSME_nnnn-nn-nn" s...
2020-05-18, 1254🔥, 0💬

"babel ... -o svg -xX" - Hide Implicit H in SVG
How to hide those H symbols (Hydrogen symbols) implicitly added to non-carbon terminal atoms in SVG with the "babel" command? If you want to hide those Hydrogen symbols implicitly added to non-carbon terminal atoms in SVG format, you can use the "-o svg -xX" option with the "babel" command. Here is ...
2020-07-22, 1245🔥, 0💬

molview.org - Draw/View/Search Molecules
What is molview.org? molview.org is a Website that offers MolView as an open source web application, and an online tool to draw, view and search molecules. MolView is an intuitive, Open-Source web-application to make science and education more awesome! MolView is mainly intended as web-based data vi...
2023-11-28, 1233🔥, 1💬

Molecule FYI-1000180
Molecule Summary: ID: FYI-1000180 SMILES: O=C1N[C@H](C)CNC2=C1SC(C=C3)=C 2C4=C3N=C(OC5=NC(Cl)=NC=C5COCC )C=C4Received at FYIcenter.com on: 2020-10-25
2020-11-11, 1233🔥, 0💬

Molecule Online Tools
Where to find FAQ (Frequently Asked Questions) on molecule online tools? I want to use them to create and visualize molecules. Here is a list of tutorials to answer many frequently asked questions compiled by FYIcenter.com team on molecule online tools. Molecular Formula Validator and Parser Molecul...
2020-04-16, 1232🔥, 0💬

Molecule FYI-1000179
Molecule Summary: ID: FYI-1000179 SMILES: CNC[C@H](O)C1=CC(O)=C(O)C=C1 Received at FYIcenter.com on: 2020-10-16
2020-11-11, 1201🔥, 0💬

Molecule FYI-1006423
Molecule Summary: ID: FYI-1006423 Names: InChIKey: VZPPTFKEWNQSCG-BHGWPJFGSA-N SMILES: COc3cc(/C=N/c1sc(C)c(C)c1C(=O) NCc2ccco2)cc(OC)c3OCReceived at FYIcenter.com on: 2023-12-15
2024-01-10, 1192🔥, 0💬

Molecule FYI-1000186
Molecule Summary: ID: FYI-1000186 SMILES: CCC/C=C/C=O Received at FYIcenter.com on: 2020-11-09
2020-12-02, 1182🔥, 0💬

Molecule FYI-1000184
Molecule Summary: ID: FYI-1000184 SMILES: CC(C)CC1=NC=CN=C1OC Received at FYIcenter.com on: 2020-11-09
2020-12-02, 1175🔥, 0💬

Molecule FYI-1005719
Molecule Summary: ID: FYI-1005719 Names: InChIKey: WPUIZWXOSDVQJU-UHFFFAOYNA-N SMILES: CC(=O)OCC(C1=CC=CC=C1)C(=O)OC2 CC3CCC(C2)N3CReceived at FYIcenter.com on: 2023-11-11
2023-11-18, 1163🔥, 0💬

pubchem.ncbi.nlm.nih.gov Molecule Database
What is pubchem.ncbi.nlm.nih.gov Molecule Database? pubchem.ncbi.nlm.nih.gov Molecule Database is the world's largest collection of small molecules with fewer than 1000 atoms and 1000 bonds. You can search pubchem.ncbi.nlm.nih.gov Molecule Database by: Chemical names Molecule formula SMILES and InCh...
2020-08-03, 1156🔥, 1💬

Molecule FYI-1000217
Molecule Summary: ID: FYI-1000217 SMILES: C1[C@@H]2CC[C@@H]3[C@]([C@H]1O )(C2)CC[C@H]1[C@@]3(C)CCC[C@@] 1(C)C(=O)O;OC[C@H]1OC([C@H]2Oc 3ccccc3NC2=O)[C@@H]([C@H]([C@@ H]1O)O)OReceived at FYIcenter.com on: 2021-01-05
2021-08-04, 1155🔥, 1💬

Molecule FYI-1000176
Molecule Summary: ID: FYI-1000176 SMILES: COCC(=O)Cc1ccc(CC#N)cc1 Received at FYIcenter.com on: 2020-10-14
2020-10-26, 1153🔥, 0💬

Molecule FYI-1000209
Molecule Summary: ID: FYI-1000209 SMILES: CC1=NC(NC2=NC=C(S2)C(=O)NC3=C( Cl)C=CC=C3C)=CC(=N1)N4CCN(CCO) CC4Received at FYIcenter.com on: 2020-12-22
2021-08-01, 1152🔥, 0💬

"babel --append ..." Command - Calculate Molecule Properties
How to use "babel --append ..." command to calculate Molecule Properties? The "--append ..." option of the "babel" command can be used to copy existing molecule properties from the input data source, and append them to the "title" field of output molecules. But the "--append ..." option can also be ...
2020-12-26, 1148🔥, 0💬

Molecule FYI-1000173
Molecule Summary: ID: FYI-1000173 SMILES: CC(C)N(C)C(=O)c2ccc(C#CCCc1ccc (Cl)cc1)cc2Received at FYIcenter.com on: 2020-10-12
2020-10-20, 1145🔥, 0💬

Molecule FYI-1000279
Molecule Summary: ID: FYI-1000279 SMILES: C[C@H](CCl)F Received at FYIcenter.com on: 2021-03-03
2021-04-17, 1143🔥, 0💬

Substructure Search with Wildcard Bond "~"
How to use Wildcard Bond in a substructure search using "babel" commands? You can use "~" in a SMARTS string as a wildcard bond to represent "ANY" bond in a substructure search using "babel" commands. Here are some examples of substructure matching with a wildcard bond "~" in the molecule pattern: f...
2020-06-08, 1135🔥, 0💬

Introduction to JSME
Where to find FAQ (Frequently Asked Questions) on basic understanding of JSME, Molecule Editor in JavaScript? Here is a list of tutorials to answer many frequently asked questions compiled by FYIcenter.com team on basic understanding of JSME, Molecule Editor in JavaScript. What IS JSME - Molecule Ed...
2020-05-18, 1133🔥, 0💬

Molecule FYI-1000357
Molecule Summary: ID: FYI-1000357 SMILES: C1=CC=C(C2=CC=CC=C12)[C@H](N1C C[C@H](CC1)C(=O)NCCC1=CC=C(C=C 1)Cl)CReceived at FYIcenter.com on: 2021-04-15
2021-05-16, 1128🔥, 0💬

"obconformer" - Generate Best Conformer
What Is "obconformer" command? How to use it to generate the best conformer from a base molecule? "obconformer" command is a command line tool provided in the Open Babel package that allows you to generate the best conformer from a base molecule. Here is the user manual of the "obconformer" command....
2020-11-22, 1127🔥, 0💬

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