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Molecule FYI-1000956
Molecule Summary: ID: FYI-1000956 SMILES: C#[CH:1] Received at FYIcenter.com on: 2021-08-07
2021-08-13, 1150🔥, 0💬

"obconformer" - Generate Best Conformer
What Is "obconformer" command? How to use it to generate the best conformer from a base molecule? "obconformer" command is a command line tool provided in the Open Babel package that allows you to generate the best conformer from a base molecule. Here is the user manual of the "obconformer" command....
2020-11-22, 1148🔥, 0💬

Stereochemistry, Chirality, Parity
Where to find FAQ (Frequently Asked Questions) in understanding how stereochemistry is supported in SDF/Mol file format? Here is a list of tutorials to answer many frequently asked questions compiled by FYIcenter.com team in understanding how stereochemistry is supported in SDF/Mol file format. What...
2021-04-04, 1147🔥, 0💬

Substructure Search with Wildcard Bond "~"
How to use Wildcard Bond in a substructure search using "babel" commands? You can use "~" in a SMARTS string as a wildcard bond to represent "ANY" bond in a substructure search using "babel" commands. Here are some examples of substructure matching with a wildcard bond "~" in the molecule pattern: f...
2020-06-08, 1147🔥, 0💬

Molecule FYI-1000175
Molecule Summary: ID: FYI-1000175 SMILES: C#Cc1ccc(C(=O)CCCC(C)(C)N)cc1 Received at FYIcenter.com on: 2020-10-13
2020-10-26, 1139🔥, 0💬

Molecule FYI-1000199
Molecule Summary: ID: FYI-1000199 SMILES: N[C@H]1CCN(Cc2ccn3ncncc23)C[C@ H]1OReceived at FYIcenter.com on: 2020-12-07
2021-02-04, 1133🔥, 0💬

Molecule FYI-1000178
Molecule Summary: ID: FYI-1000178 SMILES: CNC[C@H](O)c1ccc(O)c(O)c1 Received at FYIcenter.com on: 2020-10-16
2020-11-11, 1119🔥, 0💬

What Is Atomic Bond
What Is Atomic Bond? Atomic Bond is a physical process that ties atoms together to form a molecule. There are 3 primary types of atomic bonds that involve the outer electrons of atoms. Ionic Bond - Electrons can be transferred from one atom to another. For example, Sodium (Na) atom transfers one ele...
2020-04-16, 1109🔥, 0💬

Molecule FYI-1000177
Molecule Summary: ID: FYI-1000177 SMILES: C1CCCC1 Received at FYIcenter.com on: 2020-10-16
2020-10-26, 1100🔥, 0💬

Build Molecule Pattern in JSME
How to build a molecule pattern in JSME editor? I also want to save it a SMARTS string to do substructure search. If you want to build a molecule pattern in JSME, you can follow this tutorial. 1. Follow the previous tutorial to install JSME on your Web server. 2. Run the demo page on the Apache Web ...
2020-05-18, 1099🔥, 0💬

Molecule FYI-1000280
Molecule Summary: ID: FYI-1000280 SMILES: C(CF)CF Received at FYIcenter.com on: 2021-03-03
2021-04-17, 1085🔥, 0💬

Molecule FYI-1000939
Molecule Summary: ID: FYI-1000939 SMILES: N#CN1CCC(C(=O)Nc2ncc(-c3ccccc3 )s2)C1Received at FYIcenter.com on: 2021-07-20
2021-08-13, 1078🔥, 0💬

Molecule FYI-1000262
Molecule Summary: ID: FYI-1000262 SMILES: [CH+]=C1CC=C(N2N=CC=N2)C=N1 Received at FYIcenter.com on: 2021-02-12
2021-03-21, 1073🔥, 0💬

Molecule FYI-1000197
Molecule Summary: ID: FYI-1000197 SMILES: CC(C)C1=CC=CC=C1.[CH-]1C=CC=C1 .F[Sb-](F)(F)(F)(F)F.[Fe+2]Received at FYIcenter.com on: 2020-12-07
2021-01-09, 1073🔥, 0💬

What Is Open Babel, Chemistry Toolbox
What Is Open Babel, Chemistry Toolbox? Open Babel, is a chemical toolbox designed to speak the many languages of chemical data. It's an open, collaborative project allowing anyone to search, convert, analyze, or store data from molecular modeling, chemistry, solid-state materials, biochemistry, or r...
2020-09-15, 1069🔥, 0💬

Substructure Search with Wildcard Atom "*"
How to use Wildcard Atom in a substructure search using "babel" commands? You can use "*" in a SMARTS string as a wildcard atom to represent "ANY" atom in a substructure search using "babel" commands. Here are some examples of substructure matching with a wildcard atom "*" in the molecule pattern: f...
2020-06-08, 1061🔥, 0💬

Substructure Search with Open Babel
Where to find FAQ (Frequently Asked Questions) on Substructure Search with Open Babel? Here is a list of tutorials to answer many frequently asked questions compiled by FYIcenter.com team on Substructure Search with Open Babel. "babel -s ..." Command - Substructure Search Substructure Search with Wi...
2020-06-08, 1058🔥, 0💬

Molecule FYI-1000267
Molecule Summary: ID: FYI-1000267 SMILES: N[17C@@](F)([18C])C(=[19O])O Received at FYIcenter.com on: 2021-02-24
2021-04-04, 1054🔥, 0💬

Molecule FYI-1000165
Molecule Summary: ID: FYI-1000165 SMILES: Received at FYIcenter.com on: 2020-08-17
2020-08-25, 1048🔥, 0💬

Molecule FYI-1000277
Molecule Summary: ID: FYI-1000277 SMILES: C(S)O Received at FYIcenter.com on: 2021-03-02
2021-04-17, 1040🔥, 0💬

"obabel ... -o svg" Command - Generate SVG from SMILES
How to generate a molecule SVG picture from a SMILES string? The easiest way to generate a molecule SVG picture from a SMILES string is to use the the "babel ... -o svg" command. For example, the following command generate a SVG picture of the tyrosine molecule from a SMILES string: fyicenter$ obabe...
2021-07-19, 1039🔥, 0💬

Molecule FYI-1000954
Molecule Summary: ID: FYI-1000954 SMILES: CC(C(C(=O)OC)C(=O)OC)C(C(=O)O) NC(=O)C(CC1=CC(=CC=C1)F)NC(=O) CReceived at FYIcenter.com on: 2021-07-28
2021-11-13, 1037🔥, 0💬

Molecule FYI-1000187
Molecule Summary: ID: FYI-1000187 SMILES: CC1=C(C(C[C@@H](C1)O)(C)C)/C=C /C(=C/C=C/C(=C/C=C/C=C(\\C)/C= C/C=C(\\C)/C=C/[C@H]2C(=C[C@@H ](CC2(C)C)O)C)/C)/CReceived at FYIcenter.com on: 2020-11-09
2020-12-15, 1037🔥, 0💬

Molecule FYI-1000948
Molecule Summary: ID: FYI-1000948 SMILES: COC(=O)C1=CC=C(OCC2=CN(N=N2)C2 =CC=C(Br)C=C2)C=C1Received at FYIcenter.com on: 2021-07-27
2021-09-09, 1030🔥, 0💬

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