"babel -x..." Command - Extra Output Writing Options

Q

How to pass extra options for "babel" to write output data of a specific format?

✍: FYIcenter.com

A

If you want to pass extra options for "babel" to write output data of a specific format, you need to use one or more "-x..." options in the "babel" command line as shown in the following syntax:

babel input_section output_section [-xA...] [-xB...] ...

# "A..." and "B..." are extra options for writing output data.

For example, when "babel" is writing output data in "svg" format, it supports an option called "t", which tells "babel" to write thicker lines for bonds. To specify this "t" option for writing data, you can enter it as "-xt" in the command line as shown below:

fyicenter$ babel molecule.sdf molecule.svg -xt 

1 molecule converted
29 audit log messages

If you view "molecule.svg" in a Web browser, bonds will be dislayed in thicker lines.

⇒ "babel" vs. "obabel" Commands

⇐ "babel -a..." Command - Extra Input Reading Options

⇑ Understanding "babel" Command Line Syntax

⇑⇑ Open Babel Tutorials

2020-07-15, 1624🔥, 0💬

"babel" vs. "obabel" Commands
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List of File Formats Supported by Open Babel
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"obabel ... -o svg" Command - Generate SVG from SMILES
How to generate a molecule SVG picture from a SMILES string? The easiest way to generate a molecule SVG picture from a SMILES string is to use the the "babel ... -o svg" command. For example, the following command generate a SVG picture of the tyrosine molecule from a SMILES string: fyicenter$ obabe... 2021-07-19, 2855🔥, 0💬

"babel -o svg" Command - SVG Generation Options
What options can I use when generating SVG pictures from molecule input data? You can see a list of options supported by Open Babel when generating SVG pictures from molecule input data by running the "babel -H svg" command: fyicenter$ babel -V Open Babel 2.4.1 fyicenter$ babel -H svg svg SVG 2D dep... 2021-07-19, 1761🔥, 0💬

"babel ... -o svg -xi" - Show Atom Indices in SVG
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"babel -... --..." Command - Generic Conversion Options
What are generic conversion options that I can use on "babel" commands for all input and output formats? "babel" commands supports a number of generic conversion options that applies all input and output formats as listed below: --addtotitle Append text to the current molecule title --addformula App... 2021-07-19, 1678🔥, 0💬

"babel -a..." Command - Extra Input Reading Options
How to pass extra options for "babel" to read input data of a specific format? If you want to pass extra options for "babel" to read input data of a specific format, you need to use one or more "-a..." options in the "babel" command line as shown in the following syntax: babel input_section output_s... 2020-07-15, 1649🔥, 0💬

"babel -x..." Command - Extra Output Writing Options
How to pass extra options for "babel" to write output data of a specific format? If you want to pass extra options for "babel" to write output data of a specific format, you need to use one or more "-x..." options in the "babel" command line as shown in the following syntax: babel input_section outp... 2020-07-15, 1625🔥, 0💬

"babel ... -o svg" - Generating SVG Pictures
Where to find FAQ (Frequently Asked Questions) on using Open Babel to generate SVG Pictures from molecule input data? Here is a list of tutorials to answer many frequently asked questions compiled by FYIcenter.com team on using Open Babel to generate SVG Pictures from molecule input data. "babel -o ... 2021-07-19, 1612🔥, 0💬

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