Atom Biology General Molecule Reaction Tools Trial Virus

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Save Structure from Ketcher to Server
How to save structures created in Ketcher editor to the Web server? If you want to save the chemical structure created in the Ketcher editor to the backend Web server, you need write JavaScript code to extract the molecule data and send it as an HTML form parameter to the server. 1. Create a new HTM... 2023-10-11, 320🔥, 0💬

Restore Structure from Server to Ketcher
How to restore a chemical structure from the Web server to the Ketcher editor? If you want to build a chemical structure editor with the capability to save the structure on the Web server and restore it later to the Ketcher, you should follow steps described below: 1. Using JavaScript to export the ... 2023-10-11, 303🔥, 0💬

Ketcher JavaScript API
Where to find FAQ (Frequently Asked Questions) on Ketcher JavaScript API? Here is a list of tutorials to answer many frequently asked questions compiled by FYIcenter.com team on Ketcher JavaScript API. What Is Ketcher JavaScript API contentWindow.ketcher - Access "ketcher" Object ketcher.setMolecule... 2023-10-05, 670🔥, 0💬

Build Ketcher Editor Web Page
How to build my own Ketcher editor Web Page? If you want to build your Web page and offer Ketcher as a Chemical Structure Editor in the middle of the page, you can follow this tutorial. 1. Follow the previous tutorial to install Ketcher on your Web server. 2. Create a new HTML document, editor.html,... 2023-10-05, 400🔥, 0💬

Install Online 3Dmol Viewer on Linux
How to install Online 3Dmol Viewer on my local Linux computer? The easiest way to use the Online 3Dmol Viewer is through the hosted server at https://3dmol.org/viewer.html . But if you want to have full control of the Online 3Dmol Viewer and faster response time, you can host it yourself on a Linux ... 2023-09-10, 347🔥, 0💬

Using Embedded 3Dmol Viewer
Where to find FAQ (Frequently Asked Questions) on Using Embedded 3Dmol Viewer? Here is a list of tutorials to answer many frequently asked questions compiled by FYIcenter.com team on Using Embedded 3Dmol Viewer. What Is Embedded 3Dmol Viewer Assign Embedded 3Dmol Viewer to DIV Multiple Selections wi... 2023-09-10, 328🔥, 0💬

Install Online 3Dmol Viewer on Linux
How to install Online 3Dmol Viewer on my local Linux computer? The easiest way to use the Online 3Dmol Viewer is through the hosted server at https://3dmol.org/viewer.html . But if you want to have full control of the Online 3Dmol Viewer and faster response time, you can host it yourself on a Linux ... 2023-09-10, 321🔥, 0💬

Fetch Sequences from SwissProt with Bio.ExPASy.get_sprot_raw()
How to Fetch Sequences from SwissProt with Bio.ExPASy.get_sprot_raw() function? SwissProt with Bio.ExPASy.get_sprot_raw() function allows you to fetch protein sequences from SwissProt database. Here is an example on how to Fetch Sequences from SwissProt. fyicenter$ python &gt;&gt;&gt; fr... 2023-09-10, 320🔥, 0💬

Search History with Bio.Entrez for Subsequent Calls
How to Use Search History with Bio.Entrez for Subsequent Calls? If use Bio.Entrez.esearch() and found a large number of matches, you can use the history feature to retrieve matched records in multiple sequence Bio.Entrez.efetch() calls. 1. Turn on the history feature in the esearch() call with the u... 2023-09-10, 281🔥, 0💬

3Dmol.js Bug - data-ui=true Impacts on Selection
Why is the default style done after removing data-ui="true" in the embedded 3Dmol viewer? There seems to be code bug in the 3Dmol.js library. Here is an HTML code example, Embedded-Viewer-data-ui-Bug.ht ml,that contains 2 embedded viewers: one with data-ui="true" and the other without data-ui="true"... 2023-09-10, 273🔥, 0💬

Start Online 3Dmol Viewer on Linux
How to start Online 3Dmol Viewer on my local server? If you have installed the Online 3Dmol Viewer in your home directory as shown in the previous tutorial, you can start and test it with these steps: 1. Go to the Online 3Dmol Viewer directory: fyicenter$ cd 3Dmol.js/packages/learning-env ironment2.... 2023-09-10, 268🔥, 0💬

UI Components of Online 3Dmol Viewer
What functions are supported by UI components on the Online 3Dmol Viewer? UI components on the Online 3Dmol Viewer support the following functions: 1. Model Data Input: Accessible through the "File/PDB/URL" menu item. You can load PDB protein data from the online PDB database, molecule compound data... 2023-09-10, 263🔥, 0💬

GLViewer Class and Instance Methods
What is the GLViewer Class? GLViewer, or $3Dmol.GLViewer, is a class in the $3Dmol namespace, that defines a WebGL-based viewer. There are 2 ways to instantiate a GLViewer instance: new $3Dmol.GLViewer(element, config) -&gt; $3Dmol.GLViewer $3Dmol.createViewer(element, config) -&gt; $3Dmol.G... 2023-09-10, 222🔥, 0💬

Load Data by URL into Embedded 3Dmol Viewer
How to load data by URL into the Embedded 3Dmol Viewer? You can use "data-href" and "data-type" attributes on the DIV element to load molecule data from a URL into the Embedded 3Dmol Viewer. Here is an HTML code example, Embedded-Viewer-data-href.html ,that loads a Benzene molecule in SDF format wit... 2023-09-10, 217🔥, 0💬

UI Components of Embedded 3Dmol Viewer
What functions are supported by UI components on the Embedded 3Dmol Viewer? UI components on the Embedded 3Dmol Viewer support the following functions: 1. Model Data Input: Accessible through the first icon on the left. You can load PDB protein data from the online PDB database, or molecule compound... 2023-09-10, 209🔥, 0💬

Load Data from Another HTML Element
How to load molecule data from another HTML element into the Embedded 3Dmol Viewer? You can use "data-element" and "data-type" attributes on the DIV element to load molecule data another HTML element into the Embedded 3Dmol Viewer. Here is an HTML code example, Embedded-Viewer-data-element.h tml,tha... 2023-09-10, 198🔥, 0💬

$3Dmol.download('cid:...', ...) - Download CID Molecule
How to download molecule by CID with the $3Dmol.download() method? The syntax to download molecule by CID with the $3Dmol.download() method is shown below: $3Dmol.download("cid:{CID}", viewer, options, callback) -&gt; {$3Dmol.GLModel} viewer - The $3Dmol.GLViewer instance where the downloaded pr... 2023-09-10, 198🔥, 0💬

Missing 3Dmol-min.js on Local 3Dmol Server
Why is my local 3Dmol server redirecting to browser to https://get.webgl.org/? If you access your local 3Dmol server with a browser, and you see the https://get.webgl.org/ Website displayed, it's most likely missing the 3Dmol-min.js file on the server. This may happen if 3Dmol server was not install... 2023-09-10, 197🔥, 0💬

$3Dmol Namespace and Static Methods
What is the GLViewer Class? $3Dmol is the top namespace of the $3Dmol.js library. It contains a sub-namespace, several classes and some static methods as listed below. Sub-namespaces : $3Dmol.GLDraw - Lower level utilities for creating WebGL shape geometries Classes : $3Dmol.GLModel - A group of rel... 2023-09-10, 194🔥, 0💬

Start Online 3Dmol Viewer on Linux
How to start Online 3Dmol Viewer on my local server? If you have installed the Online 3Dmol Viewer in your home directory as shown in the previous tutorial, you can start and test it with these steps: 1. Go to the Online 3Dmol Viewer directory: fyicenter$ cd 3Dmol.js/packages/learning-env ironment2.... 2023-09-10, 191🔥, 0💬

Code Bug in server.py in 3Dmol Source Code
Why am I getting the "Connection refused" error when accessing my local 3Dmol Viewer? If you are getting the "Connection refused" error when accessing your hosted 3Dmol Viewer over the network, it's most likely caused by the code bug in the server's Python source code. 1. Make sure that your 3Dmol V... 2023-09-10, 185🔥, 0💬

$3Dmol.download('pdb:...', ...) - Download PDB Protein
How to download PDB Protein Data with the $3Dmol.download() method? The syntax to download PDB Protein Data with the $3Dmol.download() method is shown below: $3Dmol.download("pdb:{PDB_ID}" ,viewer, options, callback) -&gt; {$3Dmol.GLModel} viewer - The $3Dmol.GLViewer instance where the download... 2023-09-10, 164🔥, 0💬

URL to Start Online 3Dmol Viewer
What Is URL to Start the Online 3Dmol Viewer? You can use the following URL to the the Online 3Dmol Viewer: https://3dmol.csb.pitt.edu/vie wer.htmlThe 3Dmol Viewer will display a blank window with a menu icon. Click the menu icon, you can see 3 options to load the molecule data into the viewer: Sele... 2023-09-07, 364🔥, 0💬

"labelres={...}" - residue Label Properties
How to turn on and specify residue label properties using the "labelres={...}" URL parameter in the Online 3Dmol Viewer? You can use the labelres={key:value;key:value; ...}URL parameter to turn on residue labels with given properties. For example, the following URL turns on residue labels with defau... 2023-09-07, 334🔥, 0💬

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Atom Biology General Molecule Reaction Tools Trial Virus