Atom Biology General Molecule Reaction Tools Trial Virus

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indigo.calculate() - Calculates Chemical Properties
How to calculate chemical properties of a given structure with the indigo.calculate() method? If you want to calculate chemical properties like mass and weight of a given chemical structure you can use the indigo.calculate() method on the Ketcher Indigo interface. Here is an HTML document that shows... 2023-11-09, 276🔥, 0💬

Refresh Molecule in JSME Editor
How to refresh (read and reset) molecule created in JSME editor with the Web server? If you want refresh molecule properties displayed in the JSME editor, you can use a PHP script on the Web server to read and reset the molecule structure in the JSME editor. 1. Create an HTML form with an input fiel... 2023-04-13, 273🔥, 0💬

editor.options() - Get Editor Options
How to get a list of options used by the Ketcher editor with the editor.options() method? If you want to get a list of options used by the Ketcher editor, you can use the editor.options() method on the Ketcher Editor interface. Here is an HTML document that shows you how to get a list of options cur... 2023-11-18, 269🔥, 0💬

editor.struct().loops - Get Loop List
How to get a list of loops currently in the Ketcher editor with the editor.struct().loops property? If you want to get a list of loops currently in the Ketcher editor, you can use the editor.struct().loops property on the Ketcher Editor interface. Here is an HTML document that shows you how to get a... 2023-11-23, 266🔥, 0💬

editor.struct() - Get Entire Structure
How to get the entire structure currently in the Ketcher editor with the editor.struct() method? If you want to get detailed information about the entire structure currently in the Ketcher editor, you can call the editor.struct() method on the Ketcher Editor interface. Here is an HTML document that ... 2023-12-08, 265🔥, 0💬

Ketcher Editor Interface
Where to find FAQ (Frequently Asked Questions) on Ketcher Editor Interface? Here is a list of tutorials to answer many frequently asked questions compiled by FYIcenter.com team on Ketcher Editor Interface. What Is Ketcher Editor Interface editor.struct() - Get Entire Structure editor.struct().atoms ... 2024-01-10, 264🔥, 0💬

indigo.generateImageAsBase64() - Generate Image as Base64
How to generate images of a given structure as a Base64 encoded string with the indigo.generateImageAsBase64() method? If you want to generate an image of a given structure in PNG, JPEG, or SVG format and Base64 encoded, you can use the indigo.generateImageAsBase64() method on the Ketcher Indigo int... 2023-11-09, 263🔥, 0💬

Ketcher User Interface Menu Icons
What are Ketcher user interface menu icons? Ketcher user interface menu icons are organized into 4 toolbars: 1. Action toolbar - Displayed horizontally at the top of the window, the main toolbar contains the following buttons to perform different actions: Clear canvas - Removes everything in the edi... 2023-11-06, 262🔥, 0💬

"-o svg -xd -d" Bug in Open Babel 3.1.1
Why "obabel ... -o svg -xd -d" is not able to remove hydrogens? It seems to be code bug in the "obabel" command in Open Babel 3.1.1 release. In Open Babel 3.1.1 release, options -xd and -d are not respected together for SVG output in the "obabel -i sdf -o svg -xC -xt -xP400 -xd -d" command. For exam... 2023-01-24, 257🔥, 0💬

Ketcher Indigo Interface
Where to find FAQ (Frequently Asked Questions) on Ketcher Indigo Interface? Here is a list of tutorials to answer many frequently asked questions compiled by FYIcenter.com team on Ketcher Indigo Interface. What Is Ketcher Indigo Interface indigo.calculate() - Calculates Chemical Properties indigo.ge... 2023-11-13, 255🔥, 0💬

Show InChI String on Ketcher
How to display the InChI string of the molecule in Ketcher editor? You can follow steps below to display the InChI string of the molecule in Ketcher editor. 1. Open Ketcher editor as shown in previous tutorial. 2. Select the "Benzene" button in the template toolbar at the bottom of the editor window... 2023-10-27, 253🔥, 0💬

Call getSmiles() and getSmarts() Parallelly
Why do getSmiles() and getSmarts() methods return the same result, if they are called in 2 parallel promises? There seems to be a bug in Ketcher v2.11.0 release. If you call getSmiles() and getSmarts() methods one after the other, you are creating 2 promises The first promise seems to be overriding ... 2024-01-24, 244🔥, 0💬

editor.struct().atoms - Get Atom List
How to get a list of atoms currently in the Ketcher editor with the editor.struct().atoms property? If you want to get a list of atoms currently in the Ketcher editor, you can use the editor.struct().atoms property on the Ketcher Editor interface. Here is an HTML document that shows you how to get a... 2023-12-01, 242🔥, 0💬

editor.struct().bonds - Get Bond List
How to get a list of bonds currently in the Ketcher editor with the editor.struct().bonds property? If you want to get a list of bonds currently in the Ketcher editor, you can use the editor.struct().bonds property on the Ketcher Editor interface. Here is an HTML document that shows you how to get a... 2023-12-01, 234🔥, 0💬

Call getSmiles() and getSmarts() Chained
How to call getSmiles() and getSmarts() methods in 2 promises one chained to the other? Another way to avoid the bug mentioned in the previous tutorial is to call ketcher.getSmiles() and ketcher.getSmarts() methods in 2 chained promises. Chained promises use fulfilled and rejected handlers of the pr... 2024-01-15, 233🔥, 0💬

Ketcher Editor User Interface
Where to find FAQ (Frequently Asked Questions) on Ketcher Chemical Structure Editor User Interface? Here is a list of tutorials to answer many frequently asked questions compiled by FYIcenter.com team on Ketcher Chemical Structure Editor User Interface. Ketcher User Interface Menu Icons Show InChI S... 2023-11-06, 231🔥, 0💬

editor.structSelected() - Get Selected Sub-Structure
How to get the selected sub-structure currently in the Ketcher editor with the editor.structSelected() method? If you want to get detailed information about the selected sub-structure currently in the Ketcher editor, you can use the editor.structSelected() method on the Ketcher Editor interface. Her... 2023-11-23, 224🔥, 0💬

Ketcher File Format for Chemical Structures
Where to find FAQ (Frequently Asked Questions) on Ketcher File Format for Chemical Structures? Here is a list of tutorials to answer many frequently asked questions compiled by FYIcenter.com team on Ketcher File Format for Chemical Structures. What Is Ketcher File Format Ketcher File Structure Expor... 2024-02-11, 221🔥, 0💬

Reaction with Stereocenters in CDXML Format Error
Why am I getting CDXML loader errors on reactions with stereocenters? Ketcher 2.11.0 has a code bug that gives you a CDXML loader error if you try to load a reaction with stereocenters in CDXML (ChemDraw XML) format as shown in this tutorial. 1. Open Ketcher editor as shown in previous tutorial. 2. ... 2024-01-10, 213🔥, 0💬

Ketcher File Structure for Reaction
What is the Ketcher file structure for a chemical reaction? The Ketcher file structure for a chemical reaction is an extension of the Ketcher file structure for a molecule. Additional molecule objects are added as reactants, reagents, solvents, and products of the reaction. A long arrow is also adde... 2024-02-18, 212🔥, 0💬

Import Ketcher File to Editor
How to import Ketcher file to the Ketcher editor? If you created a Ketcher file, you can verify it by importing it to the Ketcher editor as described below: 1. Create a Ketcher file, cyclobutane.ket, with a text editor: { "root": { "nodes": [ { "$ref": "mol0" } ] }, "mol0": { "type": "molecule", "at... 2024-03-23, 207🔥, 0💬

Call getSmiles() and getSmarts() Nested
How to call getSmiles() and getSmarts() methods in 2 promises one nested in the other? One way to avoid the bug mentioned in the previous tutorial is to call ketcher.getSmiles() and ketcher.getSmarts() methods in 2 promises one nested in the other. This can be done by calling ketcher.getSmiles() fir... 2024-01-24, 205🔥, 0💬

One Molecule with Disconnected Parts
Can I specify a single molecule object with multiple disconnected parts in a Ketcher file? Yes, you can specify a single molecule object with multiple disconnected parts in a Ketcher file. Here is a simple example of Ketcher file with a single "molecule" object of a 4-carbon chain. But the bond betw... 2024-01-31, 202🔥, 0💬

Ketcher File Structure for Molecule
What is the Ketcher file structure for a molecule structure? To represent a single molecule in a Ketcher file, you need to include a referenced-object in the "nodes" array as shown below: { "root": { "nodes": [ { "$ref": "mol&lt;seq&gt;" } ] }, "mol&lt;seq&gt;": { "type": "molecule",... 2024-03-07, 192🔥, 0💬

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Atom Biology General Molecule Reaction Tools Trial Virus