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What Is Isomer
What is Isomer? An Isomer is molecule that has the same the same chemical formula as another molecule, but with a different molecule structure than the other molecule. There are several types of isomers: 1. Constitutional Isomers - Isomers that differ in connectivity are called constitutional isomer...
2020-08-03, 2739🔥, 1💬

Molecule FAQ
Where to find molecule FAQ (Frequently Asked Questions)? I want to learn more about molecules. Here is a large collection of tutorials to answer many frequently asked questions compiled by FYIcenter.com team about molecules and their structures: Introduction to Molecules What Is Molecule What Is Mol...
2020-11-11, 2686🔥, 0💬

About biotech.FYIcenter.com
biotech.FYIcenter.com is a Website for biotech professionals looking for biotech resources, software tools, career information, and so on. Just browse through the site, you will find the best information our team has prepared for you. Other FYIcenter.com Resources: Software QA Resources Developer Re...
2020-04-16, 2679🔥, 0💬

Tools for SDF/Mol V3000 File Format
What are tools that support the SDF/Mol V3000 file format? There are a number of online or standalone tools that support the SDF/Mol V3000 file format. Open Babel - Can read and write molecules in SDF/Mol V3000 file format. (Convert SDF to SDF V3) fyicenter$ obabel FYI-001.sdf -o sdf -O test.sd3 -x3...
2021-04-04, 2614🔥, 0💬

"obgen" - Generate Molecule 3D Structures
What Is "obgen" command? How to use it to Generate Molecule 3D Structures? "obgen" command is a command line tool provided in the Open Babel package that allows you to Generate Molecule 3D Structures. "obgen" command does the same job as the "babel ... --gen3D" with more options. Here is the user ma...
2020-11-11, 2573🔥, 0💬

What Is JSME JavaScript API
What is JSME JavaScript API? I want to see an example on how to use it. JSME JavaScript API is programming interface provided by JSME for your JavaScript code to interact with the JSME editor. JSME JavaScript API offers the following primary methods under the "JSApplet.JSME" class, which is provided...
2020-05-18, 2512🔥, 0💬

Open Babel Installation Options on macOS
What are the options for installing Open Babel on macOS computers? There are a number of options for installing Open Babel on macOS computers: 1. Install Open Babel with a pre-compiled binary package. Open Babel 2.3.1 macOS binary package is available. This is the easiest option to install Open Babe...
2020-09-15, 2501🔥, 0💬

"babel ... -f # -l #" - Split Large Molecule File
How to split a file with a large number of molecules? You can split a file with a large number of molecules into smaller files by extracting a chunk of molecules to the output using the "-f #" and "-l #" options. The "-f #" option specifies the index of the first molecule to be extracted. The "-l #"...
2020-09-30, 2489🔥, 0💬

Molecule FYI-1004623
Molecule Summary: ID: FYI-1004623 Names: InChIKey: BBIFXVHLVDNVGO-DXNYSGJVSA-N SMILES: C/C=C(Nc1ccc(O)c(N)c1)\\O\\N=C (N)\\c2cc(C)on2Received at FYIcenter.com on: 2023-09-15
2023-09-23, 2459🔥, 0💬

cactus.nci.nih.gov/translate - Convert to/from SDF
What is cactus.nci.nih.gov/translate SDF translator? pubcactus.nci.nih.gov/translat eSDF translator allows you to translate SDF files from and to other types of files, including SMILES, SD, MOL, etc. SDF Online Tool - pubchem.ncbi.nlm.nih.gov   For more information, visit cactus.nci.nih.gov/translat...
2021-02-02, 2443🔥, 0💬

What Are Valence Electrons
What Are Valence Electrons of an Atom? Valence Electrons of an Atom are electrons located on the most outer shell of the atom. The number of Valence Electrons of an atom is very important chemical property of the atom. There is no easy way to calculate the number of Valence Electrons of an atom. But...
2020-05-29, 2442🔥, 0💬

JSME Molecule Editor Options
What JSME Molecule Editor Options? JSME Molecule Editor Options are parameters that can be passed to the editor through the API to change it behavior. Here are the options supported by JSME: xbutton, noxbutton - show / hide the X button (default is xbutton) rbutton, norbutton - show / hide the R but...
2020-05-18, 2329🔥, 0💬

Stereoinformation in SDF/Mol V3000 Files
How Stereoinformation is stored in in SDF/Mol V3000 files? Similar to SDF/Mol V2000, stereoinformation can be stored in SDF/Mol V3000 files in 3 ways: 0D, 2D, and 3D. 0D: Stereoinformation in 0 dimension is defined by parity at atom lines as "CFG=n" options. 2D: Stereoinformation in 2 dimension is d...
2021-02-06, 2309🔥, 0💬

Convert SDF to SVG using Open Babel
How to convert Convert SDF to SVG (Scalable Vector Graphics) using Open Babel? I want to see the molecule structure as a SVG file. If you want to see the molecule structure specified in a SDF file, you can convert it to a SVG (Scalable Vector Graphics) file using the "Open Babel" tool. 1. Download a...
2020-04-16, 2279🔥, 0💬

PyMol Tutorials
Where to find tutorials on molecule visualization software PyMol? I want to know how to use PyMol. Here is a large collection of tutorials to answer many frequently asked questions compiled by FYIcenter.com team about molecule visualization software PyMol: PyMol Installation What Is PyMol Install Py...
2020-04-16, 2257🔥, 0💬

sdf2svg - PHP Script to Convert SDF to SVG
How to convert Convert SDF to SVG (Scalable Vector Graphics) using "sdf2svg" PHP script? I want to see the molecule structure as a SVG file. If you want to convert molecule structures in SDF format to SVG (Scalable Vector Graphics) format to be viewed on Web pages directly, you can download and inst...
2020-04-16, 2189🔥, 0💬

Install Open Babel Library RPM Package for CentOS
How to download and install Open Babel library RPM package for CentOS computers? Open Babel library RPM package is the base package that is required to support other Open Babel RPM interface packages. So you should download and install it first as shown in this tutorial. 1. Go back to the Linux pack...
2020-10-20, 2171🔥, 0💬

Install Open Babel from Source Code on CentOS
How to download and instal Open Babel from source code on CentOS computers? I want to build the binary programs by myself. If you want to build the Open Babel binary programs from source code yourself, you can follow this tutorial. 1. Go to Open Babel Code Repository at https://sourceforge.net/proje. ..
2020-10-10, 2162🔥, 0💬

Search Molecule by InChIKey
Can I search for a molecule by its InChIKey? Yes. You can search for a molecule by its InChIKey using the search tool prepared by FYIcenter.com. All you need to do is to enter an InChIKey, and click the "Submit" button below. If a molecule is found for the given InChIKey, it will be loaded into a mo...
2023-01-20, 2061🔥, 0💬

Build JSME Editor Web Page
How to build my own JSME editor Web Page? If you want to build your Web page and offer JSME as a molecule editor in the middle of the page, you can follow this tutorial. 1. Follow the previous tutorial to install JSME on your Web server. 2. Create a new HTML document, editor.html, to load and run th...
2020-05-18, 2034🔥, 0💬

"babel" vs. "obabel" Commands
What are the differences between "babel" and "obabel" commands? "babel" and "obabel" commands are two commands of the same Open Babel chemical data conversion program with slightly different command line syntaxes. You can see the syntax differences between "babel" and "obabel" commands by running th...
2021-07-19, 2011🔥, 0💬

What Is Radical Molecule
What is Radical Molecule? A Radical molecule, also called free radical, is molecule that has one or more radical centers. A Radical center is an atom in a molecule that has an unpaired valence electron, or odd number of valence electrons (including both bounded and unbound electrons). When writing t...
2020-08-03, 1950🔥, 1💬

Simple Pharmacokinetics Script in Python
What Is the Simple Pharmacokinetics Script in Python? Simple Pharmacokinetics Script in Python is developed by Alex Dickson and available at https://github.com/alexrd/pk . Features supported are: can implement an arbitrary sequence of doses; can specify absorption, elimination, distribution and bind...
2023-12-21, 1898🔥, 1💬

💬 2023-12-21 Ronaldo: Trying Simple Pharmacokinetics Script on Python.

biomodel.uah.es - Draw/View Molecules
What is biomodel.uah.es? biomodel.uah.es is a Website that offers an online tool to draw and view and search molecules. biomodel.uah.es uses the JSME Molecular Editor, which may be used for free under terms of the BSD Licence. JSME Editor courtesy of Peter Ertl and Bruno Bienfait. And for the 3D mod...
2020-04-16, 1892🔥, 0💬

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