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Introduction to Molecules
Where to find FAQ (Frequently Asked Questions) in understanding what is molecule and its basic properties? Here is a list of tutorials to answer many frequently asked questions compiled by FYIcenter.com team in understanding what is molecule. What Is Molecule What Is Molecular Formula What Is Atomic...
2020-04-16, 196👍, 0💬

Molecule FYI-1000040
Molecule Summary: ID: FYI-1000040 SMILES: c1ccccc1 Received at FYIcenter.com on: 2020-04-21
2020-04-21, 195👍, 0💬

What Is Atomic Bond
What Is Atomic Bond? Atomic Bond is a physical process that ties atoms together to form a molecule. There are 3 primary types of atomic bonds that involve the outer electrons of atoms. Ionic Bond - Electrons can be transferred from one atom to another. For example, Sodium (Na) atom transfers one ele...
2020-04-16, 194👍, 0💬

"babel -d" Command - Delete Hydrogens from Molecule Data
How to delete hydrogen atoms from molecule data during data conversion? If hydrogen atoms of a molecule are included in the input data source, you can use the "babel" generic option "-d" remove those hydrogen atoms during the molecule data conversion process. Here is an example of using the "-d" opt...
2020-07-15, 193👍, 0💬

Install Open Babel CLI RPM Package for CentOS
How to download and install Open Babel CLI (Command Line Interface) RPM package for CentOS computers? Open Babel CLI RPM package offers a number of pre-build command line tools for you convert and manipulate molecule data from one format to another format using Open Babel library. You can follow thi...
2020-10-10, 191👍, 0💬

Running Open Babel on macOS
Where to find FAQ (Frequently Asked Questions) on running Open Babel on macOS? Here is a list of tutorials to answer many frequently asked questions compiled by FYIcenter.com team on running Open Babel on macOS. Open Babel Installation Options on macOS Install Open Babel Binary Package on macOS Open...
2020-09-15, 191👍, 0💬

What Is "babel" Command
What Is "babel" Command? How to get command line help for Open Babel? "babel" Command is the command to invoke Open Babel different functionalities by specifing different command options. You can use "babel -H" command to get help information on Open Babel command: fyicenter$ babel -H Open Babel con...
2020-09-15, 191👍, 0💬

List of File Formats Supported by Open Babel
How to get a list of File Formats Supported by Open Babel? You can use "babel -L formats" command to get a list of File Formats Supported by Open Babel: fyicenter$ babel -L formats abinit -- ABINIT Output Format [Read-only] acr -- ACR format [Read-only] adf -- ADF cartesian input format [Write-only]...
2020-07-15, 191👍, 0💬

biomodel.uah.es - Draw/View Molecules
What is biomodel.uah.es? biomodel.uah.es is a Website that offers an online tool to draw and view and search molecules. biomodel.uah.es uses the JSME Molecular Editor, which may be used for free under terms of the BSD Licence. JSME Editor courtesy of Peter Ertl and Bruno Bienfait. And for the 3D mod...
2020-04-16, 191👍, 0💬

PyMol GUI and CLI
Where to find tutorials in understanding PyMol GUI and CLI? Here is a list of tutorials to answer many frequently asked questions compiled by FYIcenter.com team in understanding PyMol GUI (Graphics User Interface) and CLI (Command Line Interface). PyMol Screen Layout Load Molecule Strcuture from Fil...
2020-04-16, 191👍, 0💬

Molecule FYI-1000049
Molecule Summary: ID: FYI-1000049 SMILES: Received at FYIcenter.com on: 2020-05-18
2020-05-18, 190👍, 0💬

"obrotate" - Rotate Dihedral Angles with SMARTS
What Is "obrotate" command? How to use it to batch-rotate dihedral angles matching SMARTS patterns? "obrotate" command is a command line tool provided in the Open Babel package that allows you to batch-rotate dihedral angles matching SMARTS patterns. Here is the user manual of the "obrotamer" comman...
2020-10-26, 189👍, 0💬

PyMol Installation
Where to find tutorials in understanding what is PyMol and how to install it? Here is a list of tutorials to answer many frequently asked questions compiled by FYIcenter.com team in understanding what is PyMol and how to install it. What Is PyMol Install PyMol Incentive Edition on MacOS Install PyMo...
2020-04-16, 189👍, 0💬

Open Babel History and Releases
When Open Babel was first developed? And how many Open Babel releases are there? The original Babel was written by Pat Walters and Matt Stahl in 2001, based on the "convert" program by Ajay Shah. The original Babel is a remarkable chemistry file convesion tool. Pat Walters and Matt Stahl rewrote Bab...
2020-09-15, 188👍, 0💬

Build Molecule Pattern in JSME
How to build a molecule pattern in JSME editor? I also want to save it a SMARTS string to do substructre search. If you want to build a molecule pattern in JSME, you can follow this tutorial. 1. Follow the previous tutorial to install JSME on your Web server. 2. Run the demo page on the Apache Web s...
2020-05-18, 188👍, 0💬

Molecule FYI-1000044
Molecule Summary: ID: FYI-1000044 SMILES: C1=CC=CC=C1 Received at FYIcenter.com on: 2020-04-21
2020-04-21, 188👍, 0💬

Molecule FYI-1000042
Molecule Summary: ID: FYI-1000042 SMILES: CC(=O)OC1CC2CCC1(C2(C)C)C Received at FYIcenter.com on: 2020-04-21
2020-04-21, 188👍, 0💬

"obminimize" - Optimize Geometry/Energy of Molecule
What Is "obminimize" command? How to use it to optimize the geometry and minimize the energy for a given molecule? "obminimize" command is a command line tool provided in the Open Babel package that allows you to optimize the geometry and minimize the energy for a given molecule. Here is the user ma...
2020-11-11, 187👍, 0💬

Open Babel Installation Options on macOS
What are the options for installing Open Babel on macOS computers? There are a number of options for installing Open Babel on macOS computers: 1. Install Open Babel with a pre-compiled binary package. Open Babel 2.3.1 macOS binary package is available. This is the easiest option to install Open Babe...
2020-09-15, 187👍, 0💬

Migrate JME Applet to JSME JavaScript
How to migrate my old JME Applet Web pages to use JSME JavaScript? If you have old Web pages that use the JME Applet molecule editor, you migrate your old pages to use JSME by making 2 changes: 1. Load JSME JavaScript library using a "script" tag in the "head" tag. &lt;script type="text/javascri...
2020-05-18, 187👍, 0💬

Testing Area
What is test testing area for? The testing area is provided to allow visitors to post testing comments.
2020-04-15, 187👍, 9💬

Search Open Babel RPM Packages for CentOS
How to search for Open Babel RPM binary packages for CentOS computers? You can follow this tutorial to search for Open Babel RPM binary packages for CentOS computers. 1. Before searching the Internet for any RPM binary packages, you need to know the architecture type of your computer. This can be do...
2020-10-20, 186👍, 0💬

Molecule Online Tools
Where to find FAQ (Frequently Asked Questions) on molecule online tools? I want to use them to create and visualize molecules. Here is a list of tutorials to answer many frequently asked questions compiled by FYIcenter.com team on molecule online tools. molview.org - Draw/View/Search Molecules pubch...
2020-04-16, 185👍, 0💬

Install PyMol Incentive Edition on MacOS
How to download and install PyMol Incentive edition on macOS? Downloading and installing PyMol Incentive edition on macOS is straightforward and easy as shwon in the following steps: 1. Go to PyMol Website at pymol.org. 2. Download and save the macOS DMG Disk Image file: PyMOL-2.3.3_107-MacOS-py37.d.. .
2020-04-16, 184👍, 0💬

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