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Introduction to JSME
Where to find FAQ (Frequently Asked Questions) on basic understanding of JSME, Molecule Editor in JavaScript? Here is a list of tutorials to answer many frequently asked questions compiled by FYIcenter.com team on basic understanding of JSME, Molecule Editor in JavaScript. What IS JSME - Molecule Ed...
2020-05-18, 870👍, 0💬

Molecule FYI-1000049
Molecule Summary: ID: FYI-1000049 SMILES: Received at FYIcenter.com on: 2020-05-18
2020-05-18, 856👍, 0💬

molview.org - Draw/View/Search Molecules
What is molview.org? molview.org is a Website that offers MolView as an open source web application, and an online tool to draw, view and search molecules. MolView is an intuitive, Open-Source web-application to make science and education more awesome! MolView is mainly intended as web-based data vi...
2020-04-16, 834👍, 0💬

Molecule FYI-1000039
Molecule Summary: ID: FYI-1000039 SMILES: Received at FYIcenter.com on: 2020-04-21
2020-04-21, 831👍, 0💬

Introduction to SDF/Mol V3000 File Format
Where to find FAQ (Frequently Asked Questions) in understanding what is SDF/Mol V3000 file format? Here is a list of tutorials to answer many frequently asked questions compiled by FYIcenter.com team in understanding what is SDF/Mol V3000 file format. What Is SDF/Mol V3000 File Format Tools for SDF/...
2022-07-26, 822👍, 0💬

What Is Atomic Bond
What Is Atomic Bond? Atomic Bond is a physical process that ties atoms together to form a molecule. There are 3 primary types of atomic bonds that involve the outer electrons of atoms. Ionic Bond - Electrons can be transferred from one atom to another. For example, Sodium (Na) atom transfers one ele...
2020-04-16, 810👍, 0💬

"babel -i fs ... -s query_file" - Exact Match Search
How to perform exact match in fastsearch index file using a "babel" command? If you want to perform an exact match search using the fastsearch index file, you can use the following "babel" command syntax: babel -i fs index_file output_section -s query_file In the above command: "-i fs index_file" - ...
2020-05-25, 803👍, 0💬

Substructure Search with Wildcard Atom "*"
How to use Wildcard Atom in a substructure search using "babel" commands? You can use "*" in a SMARTS string as a wildcard atom to represent "ANY" atom in a substructure search using "babel" commands. Here are some examples of substructure matching with a wildcard atom "*" in the molecule pattern: f...
2020-06-08, 800👍, 0💬

Molecule FYI-1000048
Molecule Summary: ID: FYI-1000048 SMILES: Received at FYIcenter.com on: 2020-05-18
2020-05-18, 790👍, 0💬

What Is PK R Package
What Is the PK R Package? The PK R Package is designed to perform all Non-Compartmental Analysis (NCA) calculations for Pharmacokinetic (PK) data. Functions provided in PK package: lee - Two-phase half-life estimation by linear fitting ci - Function to extract confidence interval(s) nca - Estimation...
2021-05-04, 788👍, 0💬

"babel ... -o svg -xX" - Hide Implicit H in SVG
How to hide those H symbols (Hydrogen symbols) implicitly added to non-carbon terminal atoms in SVG with the "babel" command? If you want to hide those Hydrogen symbols implicitly added to non-carbon terminal atoms in SVG format, you can use the "-o svg -xX" option with the "babel" command. Here is ...
2020-07-22, 781👍, 0💬

"obabel ... -o svg -xP300" - Scale SVG Image
How to scale and center a molecule SVG image in a given square area? The default behavior of Open Babel 2.4 is different than 2.3 regarding scaling and centering SVG images. With Open Babel 2.4, the molecule SVG image is defaulted in the center of 200x200 square. With Open Babel 2.3, the molecule SV...
2020-07-22, 776👍, 0💬

chemdb.niaid.nih.gov - Molecule Compounds Against HIV
What is chemdb.niaid.nih.gov's Molecule Compounds Against HIV? chemdb.niaid.nih.gov offers a searchable database of over 40,000 Molecule Compounds Against HIV. You can search the database by structure, molecule names, chemical properties, or HIV targets. Molecule Online Database - chemdb.niaid.nih.g...
2020-04-17, 764👍, 0💬

Similarity Search with Open Babel
Where to find FAQ (Frequently Asked Questions) on Similarity Search with Open Babel? Here is a list of tutorials to answer many frequently asked questions compiled by FYIcenter.com team on Similarity Search with Open Babel. "babel -o fpt ..." Command - Similarity Search Fingerprint Types Supported i...
2020-12-22, 761👍, 0💬

Skeletal Formula Notations
What notations are used in molecule skeletal formula? There are a number of notations are used Skeletal Formula to simiplify molecule diagrams. 1. Carbon Element Symbols Removed - Since carbon elements are so common in molecules, carbon element symbols are removed from Skeletal Formula diagrams. Whe...
2020-08-03, 761👍, 1💬

JSME Molecule Editor User Interface
Where to find FAQ (Frequently Asked Questions) on JSME Molecule Editor User Interface? Here is a list of tutorials to answer many frequently asked questions compiled by FYIcenter.com team on JSME Molecule Editor User Interface. JSME User Interface Menu Icons Show InChI and InChIKey on JSME Build Mol...
2020-08-03, 756👍, 1💬

dtp.cancer.gov Basic Chemical Database
What is dtp.cancer.gov Basic Chemical Database? chedtp.cancer.gov Basic Chemical Database offers 4 ways to search for DTP open compound collection of 250,000 molecules: Structure search Basic chemical data search Chemical names search Smiles search Molecule Online Database - dtp.cancer.gov For more ...
2020-04-17, 754👍, 0💬

Build Molecule Pattern in JSME
How to build a molecule pattern in JSME editor? I also want to save it a SMARTS string to do substructure search. If you want to build a molecule pattern in JSME, you can follow this tutorial. 1. Follow the previous tutorial to install JSME on your Web server. 2. Run the demo page on the Apache Web ...
2020-05-18, 753👍, 0💬

List of File Formats Supported by Open Babel
How to get a list of File Formats Supported by Open Babel? You can use "babel -L formats" command to get a list of File Formats Supported by Open Babel: fyicenter$ babel -L formats abinit -- ABINIT Output Format [Read-only] acr -- ACR format [Read-only] adf -- ADF cartesian input format [Write-only]...
2020-07-15, 752👍, 0💬

"obconformer" - Generate Best Conformer
What Is "obconformer" command? How to use it to generate the best conformer from a base molecule? "obconformer" command is a command line tool provided in the Open Babel package that allows you to generate the best conformer from a base molecule. Here is the user manual of the "obconformer" command....
2020-11-22, 741👍, 0💬

Substructure Search with Open Babel
Where to find FAQ (Frequently Asked Questions) on Substructure Search with Open Babel? Here is a list of tutorials to answer many frequently asked questions compiled by FYIcenter.com team on Substructure Search with Open Babel. "babel -s ..." Command - Substructure Search Substructure Search with Wi...
2020-06-08, 739👍, 0💬

Stereochemistry, Chirality, Parity
Where to find FAQ (Frequently Asked Questions) in understanding how stereochemistry is supported in SDF/Mol file format? Here is a list of tutorials to answer many frequently asked questions compiled by FYIcenter.com team in understanding how stereochemistry is supported in SDF/Mol file format. What...
2021-04-04, 738👍, 0💬

Stereochemistry with Open Babel
Where to find FAQ (Frequently Asked Questions) on doing Stereochemistry with Open Babel? Here is a list of tutorials to answer many frequently asked questions compiled by FYIcenter.com team on doing Stereochemistry with Open Babel. What Is Stereochemistry Read Stereoinformation from Input Stereo Per...
2022-05-31, 735👍, 0💬

What Is Open Babel, Chemistry Toolbox
What Is Open Babel, Chemistry Toolbox? Open Babel, is a chemical toolbox designed to speak the many languages of chemical data. It's an open, collaborative project allowing anyone to search, convert, analyze, or store data from molecular modeling, chemistry, solid-state materials, biochemistry, or r...
2020-09-15, 729👍, 0💬

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