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Molecule FYI-1000041
Molecule Summary: ID: FYI-1000041 SMILES: C1CCCCC1 Received at FYIcenter.com on: 2020-04-21
2020-04-21, 211👍, 0💬

"babel -i fs ..." - Fingerprint Index Based Search
How to perform a Fingerprint Index Based Search with the "babel" command? You can perform a Fingerprint Index Based Search with the "babel" command using the "-i fs" option to specify the fingerprint index file as the input. For more information, read the help document on fastsearch index file forma...
2020-08-25, 208👍, 0💬

"babel -s ..." Command - Substructure Search
How to use "babel -s ..." command to do substructure search? You can do substructure search using the "-s ..." option of the "babel" command with the following syntax: babel input_section output_section -s smarts_string The smarts_string specifies a SMARTS string that represents a molecule pattern. ...
2020-06-08, 208👍, 0💬

JSME JavaScript API
Where to find FAQ (Frequently Asked Questions) on JSME JavaScript API? Here is a list of tutorials to answer many frequently asked questions compiled by FYIcenter.com team on JSME JavaScript API. What Is JSME JavaScript API Save Molecule from JSME to Server JSME Molecule Editor Options Loading JSME ...
2020-05-18, 207👍, 0💬

What Is Formal Charge
What is Formal Charge of an atom in a molecule? And what is the total formal charge of a molecule? The formal charge of an atom in a molecule is defined by the formula below: Fc (Formal charge) of atom = Ve - Ue - Be/2 where: Ve = number of valence electrons Ue = number of unbonded electrons Be = nu...
2020-05-29, 205👍, 0💬

peter-ertl.com/jsme - JSME (JavaScript Molecule Editor)
What IS JSME, Molecule Editor in JavaScript? JSME, Molecule Editor in JavaScript is a free molecule editor created by Peter Ertl and Bruno Bienfait. It can be used as an integrated online Web tool. JSME features are described in its documentation as: "JSME supports drawing and editing of molecules a...
2020-05-29, 204👍, 0💬

Introduction to Open Babel
Where to find FAQ (Frequently Asked Questions) on basic understanding of Open Babel, Chemistry Toolbox? Here is a list of tutorials to answer many frequently asked questions compiled by FYIcenter.com team on basic understanding of Open Babel, Chemistry Toolbox. What Is Open Babel, Chemistry Toolbox ...
2020-05-21, 204👍, 0💬

Molecule FYI-1000069
Molecule Summary: ID: FYI-1000069 SMILES: Nc1cc[nH]c(=O)n1 Received at FYIcenter.com on: 2020-05-18
2020-05-18, 204👍, 0💬

"babel -i fs ... -s ... -at n" - Top n Similarity Search
How to perform a top 10 similary search using the fastsearch index file with the "babel" command? If you want to perform a top n similary search using the fastsearch index file, you can use the following "babel" command syntax: babel -i fs index_file output_section -s query_molecule -at n -aa In the...
2020-08-25, 203👍, 0💬

Install Open Babel from Source Code on CentOS
How to download and instal Open Babel from source code on CentOS computers? I want to build the binary programs by myself. If you want to build the Open Babel binary programs from source code yourself, you can follow this tutorial. 1. Go to Open Babel Code Repository at https://sourceforge.net/proje. ..
2020-10-10, 202👍, 0💬

"babel -i fs ... -s ... -at score_range" - Similarity Search
How to perform a similary search in a given score range using the fastsearch index file with the "babel" command? If you want to perform a similary search in a specific score range using the fastsearch index file, you can use the following "babel" command syntax: babel -i fs index_file output_sectio...
2020-08-25, 202👍, 0💬

What IS JSME - Molecule Editor in JavaScript
What IS JSME, Molecule Editor in JavaScript? JSME, Molecule Editor in JavaScript is a free molecule editor created by Peter Ertl and Bruno Bienfait. It can be used as an integrated online Web tool. JSME features are described in its documentation as: "JSME supports drawing and editing of molecules a...
2020-05-18, 202👍, 0💬

Molecule FYI-1000039
Molecule Summary: ID: FYI-1000039 SMILES: Received at FYIcenter.com on: 2020-04-21
2020-04-21, 202👍, 0💬

"babel ... -o fs" - Generate Fastsearch Index
What is Open Babel Fastsearch Index file? How to generate it with the "babel" command? Fastsearch index file is an Open Babel specific binary file that stores pre-calculated fingerprints and their indexes for multiple molecules. Fastsearch index file can improve similarty search significantly faster...
2020-08-25, 200👍, 0💬

What Are SMARTS Expressions
What are SMARTS expressions? SMARTS expressions are divided into 3 types: 1. Atom Expressions - An expression that can be evaluated to an atom pattern using atom operations on atoms and atom expressions. An atom expression must be enclosed in square bracktes, if it is not a single simple atom symbol...
2020-06-08, 200👍, 0💬

Molecule FYI-1000043
Molecule Summary: ID: FYI-1000043 SMILES: CC1=CC=C(C=C1)C(=O)O Received at FYIcenter.com on: 2020-04-21
2020-04-21, 200👍, 0💬

What Is Molecular Formula
What Is Molecular Formula? A Molecule Formula is an expression of element symbols and numbers of atoms of same element types that bonded together to form the molecule. If the number of atoms of an element type is 1, it is omitted from the formula. If the number of atoms of an element type is greater...
2020-04-16, 200👍, 0💬

Running Open Babel on CentOS
Where to find FAQ (Frequently Asked Questions) on running Open Babel on CentOS? Here is a list of tutorials to answer many frequently asked questions compiled by FYIcenter.com team on running Open Babel on CentOS. Open Babel Installation Options on CentOS "DNF/YUM search" - No Open Babel Binary Pack...
2020-10-20, 199👍, 0💬

Rotamers Example
What are examples of Rotamers? The picture below gives an example of Rotamers: Stereoisomers &gt; Diastereomers &gt; Conformational &gt; Rotamers   ⇒ Molecule Online Tools ⇐ Enantiomers Isomer Example ⇑ Introduction to Molecules ⇑⇑ Molecule FAQ
2020-07-07, 199👍, 0💬

Molecule FYI-1000045
Molecule Summary: ID: FYI-1000045 SMILES: C1=CC=NC=C1 Received at FYIcenter.com on: 2020-04-21
2020-04-21, 199👍, 0💬

molview.org - Draw/View/Search Molecules
What is molview.org? molview.org is a Website that offers MolView as an open source web application, and an online tool to draw, view and search molecules. MolView is an intuitive, Open-Source web-application to make science and education more awesome! MolView is mainly intended as web-based data vi...
2020-04-16, 199👍, 0💬

Install Open Babel Library RPM Package for CentOS
How to download and install Open Babel library RPM package for CentOS computers? Open Babel library RPM package is the base package that is required to support other Open Babel RPM interface packages. So you should download and install it first as shown in this tutorial. 1. Go back to the Linux pack...
2020-10-20, 198👍, 0💬

What Is Open Babel, Chemistry Toolbox
What Is Open Babel, Chemistry Toolbox? Open Babel, is a chemical toolbox designed to speak the many languages of chemical data. It's an open, collaborative project allowing anyone to search, convert, analyze, or store data from molecular modeling, chemistry, solid-state materials, biochemistry, or r...
2020-09-15, 198👍, 0💬

Using Fastsearch Fingerprint Index
Where to find FAQ (Frequently Asked Questions) on Using Fastsearch Fingerprint Index with Open Babel? Here is a list of tutorials to answer many frequently asked questions compiled by FYIcenter.com team on Using Fastsearch Fingerprint Index with Open Babel. "babel ... -o fs" - Generate Fastsearch In...
2020-09-30, 196👍, 0💬

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