General Molecule Tools

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biotech.FYIcenter.com Links
Collections: Molecule FAQ SDF/Mol File FAQ Open Babel Tutorials PyMol Tutorials JSME Tutorials SMILES Converter Molecule Editor Interview Questions Tools and Resources Glossary of Terminologies Other Information Other Resources: Software QA Resources Developer Resources DBA Resources Windows Tutoria... 2020-11-11, 817👍, 0💬

Molecule FAQ
Where to find molecule FAQ (Frequently Asked Questions)? I want to learn more about molecules. Here is a large collection of tutorials to answer many frequently asked questions compiled by FYIcenter.com team about molecules and their structures: Introduction to Molecules What Is Molecule What Is Mol... 2020-11-11, 665👍, 0💬

JSME Tutorials
Where to find FAQ (Frequently Asked Questions) on JSME, Molecule Editor in JavaScript? I want to learn more about JSME. Here is a large collection of tutorials to answer many frequently asked questions compiled by FYIcenter.com team on JSME, Molecule Editor in JavaScript: Introduction to JSME What I... 2020-05-19, 621👍, 0💬

SDF Generator from SMILES
How to generate the molecule structure in SDF format from a SMILES string? To help you to generate the molecule structure in SDF format from a SMILES string, FYIcenter.com has designed this online tool. All you need to do is to enter the SMILES string in the form below, and click the "Go" button. Th... 2020-04-21, 593👍, 0💬

What Is SDF/Mol File Format
What Is SDF/Mol file format? SDF (Structural Data File), also call Mol file, is a text file to represent one or multiple molecule Structures and their associated properties. SDF was developed and published by Molecular Design Limited (MDL) and became the the most widely used standard for importing a... 2020-04-16, 567👍, 0💬

What Is JSME JavaScript API
What is JSME JavaScript API? I want to see an example on how to use it. JSME JavaScript API is programming interface provided by JSME for your JavaScript code to interact with the JSME editor. JSME JavaScript API offers the following primary methods under the "JSApplet.JSME" class: jsmeObj = new JSA... 2020-05-18, 566👍, 0💬

SDF File Format Specification
What are SDF (Structural Data File) format specifications? Here is summary of SDF (Structural Data File) format specifications: 1. Text File - A SDF in a text file to store multiple molecule structures. 2. Structure Separator Line ($$$$) - Each molecule structure is separated from others by the "$$$... 2020-04-16, 546👍, 1💬

💬 2020-04-16 Ivan: Thanks for sharing the information!

JSME SMILES to SDF/Mol Online Converter
How to convert SMILES to SDF/Mol file and view the molecule structure? To help you to SMILES to SDF/Mol file and view the molecule structure, FYIcenter.com this JSME SMILES to SDF/Mol Online Converter tool. All you need to do is to enter a SMILES string and click the Convert buttons. The molecule st... 2020-05-18, 544👍, 0💬

About biotech.FYIcenter.com
biotech.FYIcenter.com is a Website for biotech professionals looking for biotech resources, software tools, career information, and so on. Just browse through the site, you will find the best information our team has prepared for you. Other FYIcenter.com Resources: Software QA Resources Developer Re... 2020-04-16, 529👍, 0💬

SDF/Mol File FAQ
Where to find molecule FAQ (Frequently Asked Questions)? I want to learn more about SDF/Mol file format. Here is a large collection of tutorials to answer many frequently asked questions compiled by FYIcenter.com team about SDF/Mol file format and tools to manipulate them: Introduction to SDF/Mol Fi... 2020-04-16, 500👍, 0💬

cactus.nci.nih.gov - Generate SDF File
What is SDF generator service provided by cactus.nci.nih.gov? The SDF generator service provided by cactus.nci.nih.gov allows you to generate the SDF (Structure Data File) from any given molecule in SMILES (Simplified Molecular-Input Line-Entry System) string. To use the SDF generator service, you n... 2020-04-16, 484👍, 0💬

chem.nlm.nih.gov ChemIDplus Database
What is chem.nlm.nih.gov ChemIDplus Database? chem.nlm.nih.gov ChemIDplus Database contains over 108,000 molecules. ChemIDplus is created from more than 100 sources. The core sources of substance records correspond to those substances that are cited in one or more of the National Library of Medicine... 2020-04-17, 483👍, 0💬

Build JSME Editor Web Page
How to build my own JSME editor Web Page? If you want to build your Web page and offer JSME as a molecule editor in the middle of the page, you can follow this tutorial. 1. Follow the previous tutorial to install JSME on your Web server. 2. Create a new HTML document, editor.html, to load and run th... 2020-05-18, 467👍, 0💬

What Is Isomer
What is Isomer? An Isomer is molecule that has the same the same chemical formula as another molecule, but with a different molecule structure than the other molecule. There are several types of isomers: 1. Constitutional Isomers - Isomers that differ in connectivity are called constitutional isomer... 2020-08-03, 465👍, 1💬

PyMol Tutorials
Where to find tutorials on molecule visualization software PyMol? I want to know how to use PyMol. Here is a large collection of tutorials to answer many frequently asked questions compiled by FYIcenter.com team about molecule visualization software PyMol: PyMol Installation What Is PyMol Install Py... 2020-04-16, 423👍, 0💬

Open Babel Tutorials
Where to find FAQ (Frequently Asked Questions) on Open Babel, Chemistry Toolbox? I want to learn more about Open Babel. Here is a large collection of tutorials to answer many frequently asked questions compiled by FYIcenter.com team on Open Babel, Chemistry Toolbox: Introduction to Open Babel What I... 2020-05-21, 405👍, 0💬

Online Tools for SDF/Mol File
Where to find FAQ (Frequently Asked Questions) on online tools for SDF/Mol files? I want to use them to create, validate or convert them. Here is a list of tutorials to answer many frequently asked questions compiled by FYIcenter.com team on molecule online tools. SDF/Mol File 2D Viewer SDF Generato... 2020-04-16, 405👍, 0💬

Enantiomers Isomer Example
What are examples of Enantiomers Isomers? The picture below gives an example of Enantiomers Isomers: Stereoisomers > Enantiomers (Mirror Images) The molecule on the left is (R)-Lactic Acid with a chiral C in (R)-configuration, or right-hand configuration, or clockwise configuration. The molec... 2020-08-03, 396👍, 1💬

Save Molecule from JSME to Server
How to save molecules created in JSME editor to the Web server? If you want to save the molecule structure created in the JSME editor to the backend Web server, you need write JavaScript code to extract the molecule data and send it as HTML form parameters. 1. Create a new HTML document, save-molecu... 2020-05-18, 392👍, 0💬

chemdb.niaid.nih.gov - Molecule Compounds Against HIV
What is chemdb.niaid.nih.gov's Molecule Compounds Against HIV? chemdb.niaid.nih.gov offers a searchable database of over 40,000 Molecule Compounds Against HIV. You can search the database by structure, molecule names, chemical properties, or HIV targets. Molecule Online Database - chemdb.niaid.nih.g... 2020-04-17, 379👍, 0💬

Loading JSME JavaScript in "body"
Can I load JSME JavaScript code in HTML "body" element instead of "head"? Yes, you can load JSME JavaScript code in HTML "body" element instead of "head" 1. Create a new HTML document, load-JSME-in-body.html, with JSME loaded in the "body" element: <html> <head> <t... 2020-05-18, 377👍, 0💬

"babel ... -o svg -xX" - Hide Implicit H in SVG
How to hide those H symbols (Hydrogen symbols) implicitly added to non-carbon terminal atoms in SVG with the "babel" command? If you want to hide those Hydrogen symbols implicitly added to non-carbon terminal atoms in SVG format, you can use the "-o svg -xX" option with the "babel" command. Here is ... 2020-07-22, 351👍, 0💬

pubchem.ncbi.nlm.nih.gov Molecule Database
What is pubchem.ncbi.nlm.nih.gov Molecule Database? pubchem.ncbi.nlm.nih.gov Molecule Database is the world's largest collection of small molecules with fewer than 1000 atoms and 1000 bonds. You can search pubchem.ncbi.nlm.nih.gov Molecule Database by: Chemical names Molecule formula SMILES and InCh... 2020-08-03, 336👍, 1💬

cactus.nci.nih.gov/translate - Convert to/from SDF
What is cactus.nci.nih.gov/translate SDF translator? pubcactus.nci.nih.gov/translat eSDF translator allows you to translate SDF files from and to other types of files, including SMILES, SD, MOL, etc. SDF Online Tool - pubchem.ncbi.nlm.nih.gov   For more information, visit cactus.nci.nih.gov/translat... 2020-04-16, 329👍, 0💬

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General Molecule Tools